Syngnathus scovelli (Gulf pipefish): 125988564
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Entry
125988564 CDS
T08785
Symbol
col2a1a
Name
(RefSeq) collagen, type II, alpha 1a isoform X1
KO
K19719
collagen type II alpha
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04510
Focal adhesion
sscv04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125988564 (col2a1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
125988564 (col2a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
sscv00536
]
125988564 (col2a1a)
Glycosaminoglycan binding proteins [BR:
sscv00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125988564 (col2a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
TILa
Motif
Other DBs
NCBI-GeneID:
125988564
NCBI-ProteinID:
XP_049609850
LinkDB
All DBs
Position
2:complement(11826744..11841777)
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AA seq
1490 aa
AA seq
DB search
MFSFVDSRTLLLLVASQLILLAAVRCQQEEGQAADGCIQDAHLYHDKDVWKPEPCRICVC
DSGAVLCDEIICEEMKECAYPVIPPGECCPVCPADASAPFETISARGQKGEPGDIADVVG
PRGPAGPMGPPGDQGVRGPAGAKGDKGNAGPRGRDGEPGIPGNPGPPGPAGPAGPPGLGG
NFAAQMSTGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGAPGEAGEPGPAG
AMGPRGPPGPSGKPGSDGESGKPGKAGERGPAGPQGARGFPGTPGLPGIKGHRGHPGLDG
AKGENGAAGAKGESGASGENGAPGPMGPRGLPGERGRTGAAGAAGARGNDGLPGPAGPPG
PVGPAGAPGFPGSPGAKGEAGPTGARGAEGQQGPRGEAGTPGSPGPAGASGNPGTDGIPG
AKGSAGGPGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGLPGFKGEAGPKGELGPAG
PLGAPGPAGEEGKRGARGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGAKGAPGDRGVAG
AAGPKGATGDPGRTGESGLPGARGLTGRPGDTGPQGKVGPSGAAGEDGRPGPPGPQGARG
QPGVMGFPGPKGANGEPGKSGEKGLIGRTGLRGLPGKDGETGSAGPPGPAGPAGERGEQG
SPGPSGFQGLPGPTGSPGEAGKPGDQGVPGEGGAPGAVGPRGERGFPGERGGAGPQGLQG
PRGLPGTPGSDGPKGAIGPAGAAGPQGPPGLQGMPGERGAGGIPGAKGDRGDNGAKGPEG
APGKDGSRGLTGPIGPPGPAGPNGAKGENGPAGPSGAPGVRGAPGDRGEGGPPGPAGFAG
PPGADGQPGVKGELGESGQKGEAGVSGPQGPSGAPGPVGPTGVSGPKGARGAQGAPGATG
FPGAAGRVGAPGPNGNPGSVGPAGPSGKDGPKGARGDAGAPGRQGDAGLRGPAGAQGEKG
EPGEDGPPGADGPSGPQGLAGSRGIVGLPGQRGERGFPGLPGPSGEPGKQGSPGSGGDRG
PPGPVGPPGLTGPAGETGREGTPGSDGPPGRDGSVGIKGERGNTGPAGAPGAPGAPGAPG
PVGPLGKQGDRGEAGSQGPAGPPGLAGARGMAGPQGPRGDKGESGESGERGQKGHRGFTG
LQGLPGPPGPAGDAGASGPAGPNGAKGPPGPSGPAGKDGSNGQPGPIGPPGPRGRSGEGG
PPGPPGNAGPPGPPGPPGPGIDMSAFAGLGQTEKSPDPLRYMRADEASSSLRQHDVEVDS
TLKSLNNQIENLRSPDGSQKNPARSCRDLKLCHPEWKSGDYWVDPNIGSIADAIKVFCNM
ETGETCVYPTIANIPKKSWWTSKSNDRKHIWFGETMNGGFHFSYAQDGPAANAASVQLTF
LRLLSNEASQNLTYHCKNSIAYMDQATGNLKKALLLQGSNDVEVRAEGNSRFTYSVLEDG
CKKHTGRWGKTVFEYKTQKTSRLPIVDIAPMDIGGADQEFGVDVGPVCFL
NT seq
4473 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggattcaaggactcttctgctacttgtagcatcccaacttatttta
ctggctgccgtcagatgtcagcaagaggagggccaggcggcagacggctgcatccaggac
gcccatctgtatcacgataaggatgtgtggaagccagagccgtgccgaatctgtgtgtgt
gacagcggcgcggttctgtgtgatgagataatctgcgaggagatgaaggagtgtgcctac
cctgtcatcccacctggagagtgctgccccgtgtgccctgctgatgccagtgcccccttt
gagacgatcagcgctaggggtcaaaaaggtgaaccaggtgatattgcagatgttgtagga
ccaagaggaccagcaggccctatgggccccccaggtgaccagggagtacgtggaccggct
ggggcaaagggtgacaagggaaacgctggacctcgtggaagggatggagagcctgggatt
cccggaaaccccggaccccctggcccagctggcccagctggaccccctggacttggaggg
aactttgctgcacagatgtctacaggctttgatgagaaggccggaggtgctcagatggga
gtgatgcagggaccaatgggtccaatgggtccccgtggtcctcctggaccaagcggagcc
cctgggccacaaggttttcagggtgcccctggcgaggctggagagcccggtccagctgga
gcaatgggaccccgtggaccacctggaccttcaggaaaaccaggaagtgatggtgagagt
ggcaaacctggcaaagctggtgagcgtggacctgccggacctcagggagctcgtggattc
cccggaactcctggccttcctggaatcaaaggacacagaggacaccctggtctagatgga
gcgaaaggagagaacggtgctgcaggagcaaagggagagtctggtgcttctggagagaat
ggtgcccctggacccatgggcccacgtggtctgccaggcgagaggggacgcaccggtgct
gctggagccgcaggcgctcgtggaaatgatggcttgcccggtcctgctggtccacctggg
cctgttggtcctgctggagctccaggtttcccaggatctccaggagccaagggtgaagct
ggtcctactggagcccgcggagctgaaggccaacagggtccccgtggagaggccggtact
ccaggatctcctggacctgccggagcatcgggtaaccctggaactgatggtattcctgga
gccaaaggatctgctggtggtcctggtattgctggtgccccaggtttccctggcccccga
ggcccccctggaccacagggagcaacaggccccctgggacccaaaggacagtctggtgac
cctggtcttcccggattcaaaggtgaagcaggacctaagggcgaacttggccccgctggt
cccctaggtgcacctggcccagctggtgaggaaggaaagagaggtgcaagaggagagccc
ggagctgccggaccactcggacctcccggagagagaggagctcctgggaaccgtggtttc
cctggtcaagatggtcttgctggcgctaagggtgccccaggtgaccgtggtgttgctggt
gccgctgggcctaaaggtgctaccggggaccccggacgcacaggagagtctggtcttcct
ggagcaagaggtcttactggccgacctggagatactggtcctcagggcaaagttggacct
tctggtgccgctggtgaggatggtcgccccggcccccctggtcctcagggagcccgtgga
cagccgggagtgatgggattccctggaccaaaaggagccaatggcgagcctgggaaatct
ggagagaaaggtcttattggccgtactggtctgagaggcctgcccggaaaagatggtgag
actggatcagccggaccgccaggccccgctggacccgctggggagagaggagagcaaggt
tcacccggaccttctggcttccagggtctgcctggaccaactggttcccctggggaggct
ggaaaacccggagaccagggtgttcctggagaaggtggagctcctggtgctgttggacca
agaggtgaacgtggtttccctggagagaggggtggtgctggtcctcagggtctgcaagga
ccacgcggacttcccggaacacctggaagtgatggacccaagggagccattggacctgct
ggagctgcaggaccccagggaccccctggcctgcagggtatgcccggagagagaggagcc
ggcggaatcccaggagccaaaggagacagaggtgataatggagcaaagggacctgaagga
gctcctggaaaggatggttctagaggtttgaccggtcctattggtcctcctggacctgct
ggaccaaatggtgccaagggtgagaatggacctgcaggaccttctggtgctcctggcgtt
cgtggtgcacctggtgaccgtggtgagggaggtcctcctgggcctgctggttttgctgga
cctcctggtgcagatggtcagcctggagtcaagggagagcttggtgagagcggacagaag
ggagaggctggtgtttctgggcctcagggaccatcaggtgcccccggacctgtgggccca
actggtgtttctggtcctaaaggagcacgtggtgctcagggagctcctggtgccactggt
ttccctggtgctgctggtagagtaggcgctcctgggcctaatggtaaccctggttccgtt
ggacctgctggaccctctggtaaagacggaccaaagggtgcccgtggtgatgcaggggcc
cccggaagacagggagatgctggtcttcgaggacctgctggtgcgcaaggagaaaaggga
gagcccggagaagatggaccccctggtgctgatggaccttcagggcctcagggtttggct
ggatctcgtggtattgttggtttgcctggccagcgtggagagagaggcttccctggtctt
cctggaccttctggtgagcctggtaaacaaggatctcctggctccggtggtgaccgtgga
cctcctggacctgtcggaccccctggacttactggacctgctggagagactggaagagag
ggtactcctggatcagatggtccacctggcagagatggatctgttggaatcaagggagag
cgaggtaacactggtcctgctggtgcccctggagctcctggtgctcctggtgcccctggc
cctgttggacctcttggcaagcaaggagatagaggagaagctggttcacaaggacctgct
ggacctcctggactcgcaggcgcacgaggaatggctggaccccaaggaccacgtggagat
aagggagagagtggtgaatctggcgagagaggacagaaaggtcaccgtggcttcactggt
ttgcagggtcttcctggacctcccggtcccgctggagatgctggcgcttctggacccgca
ggaccaaacggagctaagggaccacctggaccatctggacccgctggcaaagatggatct
aacggacagcctggccccattggaccacctggacctcgtggacgctctggagagggtggc
ccacccggtcctcctggaaacgctggaccccctggtcctcctgggcccccaggccctggc
attgacatgtctgccttcgctggtttgggtcagactgagaagtctcccgatccactgaga
tacatgagggctgatgaggcctccagttccctgagacagcacgatgttgaggttgattcc
acactcaagtcgctcaacaaccagattgagaacctgcgcagccccgatggctcccagaag
aaccctgctcgctcttgcagagacctcaaactatgccaccctgaatggaagagcggtgac
tactgggttgaccccaacattggaagcatagctgatgccatcaaggtcttttgcaacatg
gagaccggtgagacctgcgtctacccaactattgccaatataccaaagaagtcctggtgg
actagcaagagcaatgatcgcaagcacatctggtttggagagaccatgaatggaggattc
cacttcagctacgcccaggatggccctgccgccaacgccgccagtgttcaactgaccttc
ttgaggcttctttccaatgaggcttcccagaacctcacgtaccactgcaagaacagcatc
gcctacatggatcaggccacaggcaacctgaagaaggctttgctgctgcagggctccaac
gatgtggaggtccgcgcagaaggcaacagccgcttcacatacagcgtgttggaagatggc
tgcaagaaacacacaggccggtggggcaaaactgtctttgagtacaaaacacagaaaacc
tcccgtctgcctatcgtggacattgctcctatggatatcggaggagcggatcaggagttt
ggcgtggatgtaggcccagtctgcttcttgtaa
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