Syngnathus scovelli (Gulf pipefish): 125988565
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Entry
125988565 CDS
T08785
Symbol
aaas
Name
(RefSeq) aladin
KO
K14320
aladin
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
125988565 (aaas)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sscv03019
]
125988565 (aaas)
Messenger RNA biogenesis [BR:
sscv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
125988565 (aaas)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40
ANAPC4_WD40
WD40_Prp19
Beta-prop_EML_2
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
Beta-prop_RIG_2nd
eIF2A
PD40
Beta-prop_WDR35_TULP_N
Beta-prop_CAF1B_HIR1
NBCH_WD40
Motif
Other DBs
NCBI-GeneID:
125988565
NCBI-ProteinID:
XP_049609852
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Position
2:11822053..11826467
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AA seq
517 aa
AA seq
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MCSLALFNPPLHPGQTTLCETNNELLTGSNAQERLQKDSSPQSLYFPRDSFKLHSRTESS
SKAAFLDHSETLWMRSAAAWRDGGFTGLLNEIANSHEEVPKWLSVSSGCILALLQKISSF
HNSLFPHLTLSSEDMIAEFSQALNWSDCVVRAFAWHPHTDKFAVALLDDSIKIYNPQSLT
TPTLKHRLQRSVAAVQWKPLCASGLAVACQNCLLVWNVDPCSLSTRPSSGCAQVLSHPGH
SPVTSIAWSPNGSLLASASPKDTAMMVWDVAAESCVPLQRVGGGGVSFLSWSTDGSHLLA
STPSALFRVWETRRWTCERWPCEKGRCQSGCWSPDGSRLLFTVQGETVIYALTFTETPGV
LTGTTKGSPVASVVADLSQTTFNTSQGEVTVGGEIQSLTWDPRGERLAVLFKGDPQLDQP
AVIPVFKTRTKPIFELLPCGFVQGELGAQPRLLQFHPNFQHGALLTVCWSTGRITHVPFY
FQSGIRQFRINGSPSLPRPQEHSADLVNQSLFTELLS
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
atgtgttctctggctttgtttaaccctccgcttcaccctggacaaacgactctgtgcgag
accaacaacgagcttctgacggggagcaacgcgcaggagcggctgcagaaggactcaagt
cctcagagtttgtacttcccccgagactccttcaagctgcacagtcgcactgagagcagc
agcaaggcggccttcttggaccactccgagaccttgtggatgaggagtgcagcagcttgg
cgtgatggtggttttacagggctgttaaatgaaatcgctaactcccacgaagaggtgccg
aaatggttgtctgtgagttctgggtgcatcctggcattgctgcagaaaatctcctctttt
cacaactccttgttccctcatctcacattgagtagtgaggacatgattgcagaattttca
caagcgcttaactggtcagactgtgtggtgcgagcctttgcttggcatcctcacacagat
aaatttgccgttgccctgctggatgactcaataaagatctacaatccccaaagtctcacg
actccaaccctgaagcaccgtctccagaggagtgtggcggcagtgcagtggaagccgctg
tgtgcgtctggactcgctgtggcgtgccagaactgtttactggtctggaatgtggaccct
tgctcgctgtccaccaggccttcgtccggatgcgcgcaggtgttgtctcatcccggccac
tcgccagtcacttccattgcttggtcacccaacggttctctcctggcctcggcctcgccg
aaggacacagcgatgatggtatgggatgtcgcggccgagagctgtgtgcctctccagcgc
gttggaggtggaggggtcagctttctgtcctggtccacagatgggagccatcttcttgcc
tcaacaccatctgcgctcttcagggtgtgggagaccaggagatggacgtgtgagcgttgg
ccatgtgagaaaggccgctgccagtccggctgttggagtccagatgggagtagacttcta
ttcaccgtacagggagaaactgttatctacgctctcaccttcactgaaacaccaggggtc
ctcacaggcacaaccaaagggtcaccagtggcatcagtggtggctgacctatcgcagaca
acctttaacacatcccagggagaagtcactgtcggtggagagatccagtctctgacttgg
gatccgagaggagaaagactcgctgtgcttttcaaaggtgatccacaactagaccaacct
gcagtcattcccgtctttaaaaccagaacaaagcccattttcgaacttttgccatgcggt
tttgttcaaggggagcttggtgcccaaccgagactgctgcagttccacccgaattttcaa
cacggagctctgctcactgtgtgttggtccactggaagaattacccacgtgcctttctac
ttccaaagtggcatccgtcaatttaggatcaatggcagtccgtcgctaccacgtcctcag
gaacattctgccgacctcgtcaatcagtcgctctttactgagctcttgtcatga
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