Syngnathus scovelli (Gulf pipefish): 125988580
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Entry
125988580 CDS
T08785
Name
(RefSeq) probable ribonuclease ZC3H12C
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sscv03019
]
125988580
Messenger RNA biogenesis [BR:
sscv03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
125988580
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_Zc3h12a
Regnase_1_C
UBA_6
zf-CCCH_2
zf-CCCH_4
UBA_N4BP1
UBA_N4BP1_C
Motif
Other DBs
NCBI-GeneID:
125988580
NCBI-ProteinID:
XP_049609882
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Position
2:complement(1445846..1454102)
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AA seq
876 aa
AA seq
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MGQKNHAEAGAGRILHLELEYLHVAGADRQAGVADEPFAMDEQRESDTGATDAPLVAVAE
DGAKEVEPPASPTAALTADLNPNRGQSGSTPSKSGHQPLCRTQCVDLGTEGPPESPVEPS
SECRPVSQENPKSEPAPVDEQYQAKLGFALKLGYSEETVRLVLSKLGPRTLINDILGELV
KRGCSDGEQPVASSSSTSSSSCSSYGSSDLPAASGMDSPCPSDQTCDQGNLRPVVVDGSN
VAMSHGNKEVFSCQGIQLAVEWFLERGHQDVTVFVPAWRKEQSRPDAPITDQEILRRLEK
EKILVFTPSRRVQGRRVVCYDDRFIVKLAYESDGIIVSNDNYRDLANEKPEWKKFIDERL
LMYSFVNDKFMPPDDPLGRHGPSLDNFLRKRPMMPEQKKQPCPYGKKCTYGHKCKYYHPE
RGAQPQRAVADELRASAKTCITTKNQGDAGLVKSHSVPAGRMEAKKGVAKRQSDPGVRAL
SYGDAEEKLAAKERTESQRAADVSAANCSGIAAAPGGHGQLTPQGVPPAPCHDRYPHCES
PDVSYYSVAHAYSGLRISSRQSPDSRFPHDADLRLGSTGSAGSECGSESSASCGSSCDSY
GDRPCHACQDASVDDASQYGNPHGRPQFRQAAGSHERCSFHDYASKITNPGAHGYDTCAG
PGQSWDHNQAGNTGPKALLYPLPFHFQHQPLATRSSCPADYHTANTPASPTGRRVAPTRA
ESASDCHLYEHQCVSQHHHRMKALPTWDSGHYREPPALPLYGPGAYQSPASWHSPQWAQD
GYTPRHLPHPTLHSSHYLNHPLPQSPLPPHLAPSSHMFPESPEHGRFGDAREKAYTNLCN
IFPPELVSRVMARSPHVTDPQQLAAAILVEKAQMGY
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgggacagaagaatcatgcggaggcaggagctggccgcatcctccacttggaacttgag
tacctccacgtagcaggggccgaccggcaggctggcgttgccgacgagcctttcgccatg
gacgagcagagggagagtgacaccggcgctaccgacgcccctcttgttgctgtggcagag
gacggcgccaaagaagtcgagccgccggcatctcccactgccgcacttaccgccgacctc
aacccaaacagaggacagagcggctccactcccagcaagagcggccaccagccgctctgt
cgaacccagtgcgtggacttggggacagaaggaccgcccgagtcgccggtcgaaccttca
tcggagtgccgacccgtgtctcaggaaaaccccaaatctgagccggcacccgtcgacgag
caatatcaggccaaactgggttttgcgctcaaactgggttattctgaggagacggtacgg
ctggtcctctccaagttgggaccacgcaccttgatcaacgacatattgggagagttggtc
aaacggggctgttcagatggcgagcaaccagtggcgtcatcttcctcaacgtcatcgtcc
tcttgctcctcttacggttcctctgatttgccggcagcttcaggaatggactcaccgtgc
ccgtcggaccagacgtgtgaccagggaaacctgcgccctgtcgtagtggatggcagtaat
gtcgccatgagccacggcaacaaggaggtgttctcctgccagggcattcagctggctgtc
gagtggttcttagaacgcggccaccaggatgtgacagttttcgtccctgcgtggaggaag
gagcagtctcggcccgacgccccaataacagaccaagaaatcctgcggcgtctggagaag
gagaagatcctcgtgttcacgccctcacgccgcgtgcaaggtcgccgcgtggtctgttac
gacgaccgctttattgtcaagctggcttacgagtcggacggcatcatcgtgtccaacgac
aactacagagacctcgcgaatgagaaacccgagtggaagaagttcatcgacgagcgacta
ctcatgtactcctttgtcaatgacaaattcatgccaccagatgacccactcggccgacac
ggtcccagcttagacaacttcttaaggaaaagaccgatgatgcctgagcagaaaaaacag
ccttgtccttacgggaagaagtgcacttacggccacaaatgtaagtactaccacccggag
cgaggcgctcagccgcaacgtgctgtggccgatgagctccgggccagtgccaagacctgt
atcaccaccaagaaccagggcgacgccggactggtgaagagccacagcgtgccggccgga
aggatggaggcgaagaaaggggtggcaaaacgccagtccgacccgggcgttcgagctctt
tcgtacggcgacgccgaggagaaactggcggcaaaagagaggacggaaagccagagggcc
gccgacgtatccgctgctaattgcagcgggatcgcagcagctccaggaggccacggccag
ctgacccctcagggtgtccctccggccccctgtcatgaccgctacccgcactgcgagtcc
ccagacgtgagctactactccgtggcgcacgcctacagcggtcttcgcatctcatccagg
cagagcccggatagtcgcttcccgcacgacgccgacctacggctgggctccaccggatcg
gccggctccgaatgcggcagcgaaagcagcgccagttgcggcagcagctgcgactcgtac
ggcgatcggccgtgtcacgcttgccaggacgcttcggtggacgacgccagccaatacggc
aacccgcacggtcgcccgcagttccggcaagcagcgggaagccacgaacgctgcagcttt
cacgattacgccagtaaaatcaccaacccgggagcgcacgggtacgacacatgcgcagga
ccggggcaaagttgggatcacaatcaggctggcaacacgggtccaaaagcgcttctctac
ccattaccctttcatttccagcaccaaccgctcgcaacacgttccagctgcccggccgac
taccacacggcgaacacccccgcttctccgaccggccggcgtgtagctccgaccagagcc
gagagcgcatccgattgtcatctttacgagcatcagtgcgtatcccaacatcaccaccgc
atgaaagctttgcccacctgggatagtggccactacagggaaccgccagctcttcctctg
tacgggcccggcgcctatcaaagtccggcatcgtggcactcgcctcagtgggcgcaagat
ggctacacgccacgccacttgcctcatcccactctccactcatcacactatttaaatcac
ccgctgccccaatctcctctcccacctcacctggccccttcctcacacatgttccccgag
tctcccgaacacggccgctttggggacgccagggagaaagcgtataccaacctgtgcaac
atttttccacctgagctggtgagtcgggtgatggccaggagcccccatgttacggacccc
cagcaactggcagctgccattttggtggagaaagctcagatgggctactga
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