Syngnathus scovelli (Gulf pipefish): 125988605
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Entry
125988605 CDS
T08785
Symbol
ube4b
Name
(RefSeq) ubiquitin conjugation factor E4 B isoform X1
KO
K10597
ubiquitin conjugation factor E4 B [EC:
2.3.2.27
]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04120
Ubiquitin mediated proteolysis
sscv04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
125988605 (ube4b)
04120 Ubiquitin mediated proteolysis
125988605 (ube4b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sscv04121
]
125988605 (ube4b)
Enzymes [BR:
sscv01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
125988605 (ube4b)
Ubiquitin system [BR:
sscv04121
]
Ubiquitin ligases (E3)
U-box type E3
125988605 (ube4b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ufd2P_core
U-box
Motif
Other DBs
NCBI-GeneID:
125988605
NCBI-ProteinID:
XP_049609960
LinkDB
All DBs
Position
2:19680061..19693702
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AA seq
1378 aa
AA seq
DB search
MEELSADEIRRRRLARLAGGQSSQPSTPLSTPLTSPQRETPPGPLPGPSGVTSHPPPPAA
SQSLGLNAHSGTPATSPIGTTVCSRVFCLLQGVAYGSQSSEGVSSLSSSPSNSLETQSQS
LSRSQSMDIDTASCEKSMSQVDVDSGIENMEVEDSDRREKRNLTEKEASANSDVTEDQAL
QLICKILRVSWKEQHRDVIFLPSLAAEFQRNPKDVYSDFKDLIGQILMEVLLISTQSPVH
NPFASLTATSQPIAAAKSPDRHLTLVQPSSQGGSPMGTSAGSFGASSLSSLYACGSPYPM
SLDAAKRSSPNAPTPTTPSVPSTPSTPQFFVPPSPPTPTAPLRPSLNPSSAPMPISQRYR
PYSVSSPWGAPSPTSPGQRAFSFFPLSPSPAGLTVPPNTPIPLSTPSNPTLSLSLLPVVP
PSPRTNARQATFASRIPPSSPLSLPFAFSDISQGSSDEESEEEEDFARVQFGSSHGACGG
SVSCELTGDRFTIEACKETEMLNYLIERFDSVGMEERKAPKMCNQPNVSQLLSNIRSQCI
SHIALVLQGCLTQPRSSLQHSLLVPYMLCRNLPYGFIQELVRITHQEEDVFRQIFIPILH
GLALAVKECSFDSDNFKFPLMALAELCEIKFGKTHPVCSLVTSLPLWCPKPLSPGCGREI
QRLSYLGAFFSLSVFSEDDTKVGDKYFSGPAITMENTRVVSQSLQHYLESARGDLFKVLH
NILLNGETRDLALNYMAALVNYNVKKAQMQTDDKLVSTDGFMLNFLSVLQQLSMKIKLET
VDPFYIFHPRCRLVVSPEETRVKATMEELKSWLSELHEDPTKFSEPKFPTECFFLTLHTH
HLSILPSCRRYIRRLRAIRELNRTVEELKNSESQWKDSPLASRHREMLKRCKTQLKKLVR
AKACADVGLLDENLLRKCLQFYSTVIQLILRMVDPAYPNITLPLNPEIPKSFAALPEFYI
EDVAEFLLFVVQYSPQVLYEPCVQDIVTFLVVFICSQNYIRNPYLIAKLVEVLFVTNPAV
QPRTQRFSEMMENHPLSIKQLVPALMKFYTDVEHTGATSEFYDKFTIRYHISTIFKSLWQ
NIAHHGTFMEEFNAGKQFVRYINMLINDTTFLLDESLESLKRIHEIQEEMKNKDQWDQLP
RDQQQSRQSQLTQDERVSRSYLALATETVEMFHILTKQVQKPFLRPELGPRLAAMLNFNL
QQLCGPKCRDLKVENPEKYGFEPKKLLDQLTDIYLQLDCARFAKAIADDQRSYSRELFEE
VISKMRKAGIKSSIAIEKFKLLSEKVEEIVAKNSQLEMDYSDAPDEFKDPLMDTLMTDPV
MLPSGNIMDRSIILRHLLNSPTDPFNRQPLTESMLESIPELKERIHAWMREKQGGRPV
NT seq
4137 nt
NT seq
+upstream
nt +downstream
nt
atggaggaattaagcgcagatgagattcgcagaaggagattggcacggttggcaggggga
cagtcctcacagcctagcacccctctcagcacccccttgacatcaccacagagagaaact
ccaccgggaccgctccctggaccctcaggtgtaacatctcatccccctccaccagctgcc
tcacaatcattagggctcaatgctcacagcggtacccctgccacatcccccattggcacc
actgtgtgctcacgcgtgttttgccttttgcaaggtgtggcttatggcagtcaaagtagt
gaaggtgtcagctccctttccagctccccctccaacagccttgagactcagtcccagagt
ttgtcccgttcacagagcatggatattgacactgcctcttgtgaaaagagcatgtcccaa
gtggatgtggactcggggatagagaacatggaggtggaagacagcgaccgcagggagaag
aggaacttgaccgaaaaagaagcttctgcaaactcagatgtcacagaagaccaggctctg
cagctcatttgtaagatcctgcgcgtttcatggaaggagcagcatcgcgatgtcatcttc
ctcccttcactggctgctgaattccagcgtaaccctaaagatgtgtactctgattttaaa
gacctgatcggccagatcctgatggaggtcctcctcatctcaacccagtcgcctgtccac
aaccccttcgccagcttgaccgccacctcgcagccaattgcagcagccaaatctccagac
cgccacctgacattggtacaaccctccagccaaggtggcagccccatgggcaccagtgca
ggctcctttggcgcaagctctctgtcaagtctgtatgcgtgtggtagcccttacccaatg
agtctggatgcagccaagaggagctcaccaaatgcccccacacccaccaccccctctgta
ccttctacaccatctacgccacagttctttgttccacccagcccacctactcccaccgct
cccctcagaccatctctcaacccttcgtctgcccccatgcccatttcccagcgttatcgg
ccttactctgtctcatctccttggggagccccgtccccaaccagcccaggacaaagagct
tttagcttttttccactatctcctagcccagcaggcctcactgtgccccccaataccccg
attcctctgtcaacacctagcaacccgaccctctccctaagtttgcttcctgtggtcccg
ccttctcccagaacaaatgcccgacaggccacctttgcatcaaggatcccgccttctagc
cccttgtccctcccgtttgccttctctgacatatctcagggcagcagcgatgaagagtct
gaggaggaggaggattttgcacgggttcagtttgggtccagtcatggtgcatgtggaggg
tcagtgtcttgtgagttgaccggcgaccgcttcaccatcgaagcatgcaaggagacagag
atgctgaactacctcattgagcgctttgacagtgttggcatggaagagaggaaagctcct
aagatgtgtaaccaaccaaatgtcagccagcttcttagcaacattcgctctcagtgtatc
tctcacattgccctcgttctgcaaggatgtctgactcagcctcgaagctctctccagcat
tctctgctggtaccttatatgctgtgccggaacctcccatatggctttatccaggaattg
gtgcgcattacccaccaggaagaagacgtattcagacagatcttcattcctatcctccat
gggctggctctcgccgtgaaagaatgttcctttgacagcgacaactttaagttccccctc
atggcattagctgagctttgtgaaatcaagtttggaaagactcaccctgtgtgcagtttg
gtaacttcccttccactgtggtgtcccaaacctttgagcccaggatgtggcagggagatc
cagaggctgtcctaccttggtgctttcttcagcctctctgttttttctgaggatgatacc
aaagtaggagacaagtatttttccggtccagctatcaccatggagaacacgagagttgtc
agccagtccctgcagcattatctggagtcagcaaggggtgacctgtttaaagttcttcac
aacatcctgctaaacggagagacgcgggatttagccctaaattacatggcagctttagtc
aactacaatgtgaagaaagctcagatgcagaccgatgacaagctggtgtcgacagacggt
ttcatgctcaacttcctgtcagtgctgcagcaacttagcatgaaaatcaagctggagaca
gtggatcccttctacattttccaccctcgttgtcgccttgtcgtcagcccagaggagacg
cgcgtaaaggccacaatggaagagctcaagagctggctgtctgagctacatgaagatccc
accaaattttccgagccaaagttccccacagagtgtttcttcttgaccctgcatacccac
catttgtctatcctgcccagctgcaggcggtacatccgcaggttgcgagcaattcgtgaa
ctcaacaggactgtagaggagctgaaaaacagtgaatcccaatggaaggactctcccttg
gccagtcgtcacagagaaatgctgaagcgttgcaaaacgcaactcaagaaactggttcga
gccaaagcttgcgctgacgtgggtcttctggatgagaacctgctccgtaaatgtttgcag
ttctacagcactgtcatccagctcattctccgtatggtggaccctgcgtacccaaacatc
accctgccgttgaaccctgagattcccaaaagctttgctgcgctcccggagttctatatt
gaagatgtggctgagtttttgctttttgttgtgcaatattctccccaggttttatatgag
ccttgtgttcaagacatagtcacctttttggtggtgttcatctgcagtcagaactacatc
aggaatccgtaccttattgccaagttggtagaagttctgtttgtcaccaaccctgccgtg
cagcctcgcactcagcgcttttctgaaatgatggagaaccaccccttgtccatcaaacag
ctggtgcccgcccttatgaagttctacactgatgtcgagcatactggtgccaccagcgaa
ttctatgataagttcaccataaggtaccacatcagcacaatctttaagagtctgtggcaa
aacattgcccatcacggcacattcatggaagaattcaacgccggcaaacagtttgtccgc
tacatcaacatgttgatcaatgacaccaccttcctgttagatgagagccttgagtctctg
aagcgtattcatgagattcaagaggagatgaagaataaggatcagtgggatcagcttccc
agggaccagcagcagagccgccagtcccagctgactcaggatgagcgagtgtctcgctcc
tatctggccctggccacagagacagtcgaaatgtttcacatactcactaagcaggtccaa
aaacctttcctcaggcccgagctcggcccacgtttagctgccatgctgaacttcaacctc
cagcagctctgtgggcccaagtgtcgggacctgaaggtggagaatcctgaaaagtatggc
ttcgaacccaagaagctcttagaccagctaactgacatctacctacagctagactgtgcc
cgctttgctaaagcaattgcagatgaccagcggtcgtacagccgagagctgtttgaggag
gtcatctcaaaaatgaggaaggctggtatcaagtcctcaatcgccattgaaaaattcaag
ctgctatcagagaaggtggaggaaatagtggccaagaactcccagttggaaatggactat
agcgatgcacctgatgagttcaaagatcctttgatggacacactgatgaccgaccctgtg
atgctgccctcggggaacatcatggaccggtccatcatccttcgccacttgctcaactcg
ccgactgatcccttcaatcggcagccgctcactgagagcatgctggagtcaattcctgaa
ctaaaggagaggatccacgcatggatgagagagaaacagggaggacgacctgtgtaa
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