Syngnathus scovelli (Gulf pipefish): 125988673
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Entry
125988673 CDS
T08785
Name
(RefSeq) sodium channel protein type 8 subunit alpha isoform X1
KO
K04840
voltage-gated sodium channel type VIII alpha
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
125988673
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
sscv04040
]
125988673
Ion channels [BR:
sscv04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
125988673
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
PKD_channel
IQ_SCN5A_C
FraC
HpsJ
GPHH
Lustrin_cystein
Motif
Other DBs
NCBI-GeneID:
125988673
NCBI-ProteinID:
XP_049610099
LinkDB
All DBs
Position
2:complement(26977458..27132957)
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AA seq
1965 aa
AA seq
DB search
MAAPLLAPPGPDSFKRFNAESLAALEQRINEEKNRKPPKQDSSYRDDDDENKPKPNSDLE
AGKSLPYIYGDIPKGMVAVPLEDLDPYYLNSQKTFIVLNRGKTIFRFSATPALYFINPFN
PVRQIAIKILIHSLFSMIIMCTILTNCIFMTFSDPPEWSKQVEYTFTGIYTFESLVKITA
RGFCIDGFTFLRDPWNWLDFMVISMAYITEFVNLGNVSALRTFRVLRALKTISVIPGLKT
IVGALIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRHKCVIWPINITESYPVNGSFD
WDAYIMNNTNFYFLPGQIDALLCGNSSDSGRCPEGYTCMKAGRNPNYGYTSFDSFGWAFL
ALFRLMTQDFWENLYMLTLRAAGKTYMIFFVLVIFVGSFYLVNLILAVVAMAYEEQNQAT
MEEAQQKEEEFKAMLEQLKKQQEEAQTAAMATSAGTVSEDAVEDDGGGRLSCSSSEMSKL
SSKSAKERRNRKKKWRQKEQEKEKGDSEKFVKSESDDGSKRSRFRFPDNRLGRKSSIMNQ
SLLSIPGSPFLSRHNSKSSIFSFKGRGKDVGSENEFADDEHSTVEECEERRGSLFSPYRR
SSYSGYHGKRNSTVDCNGVVSLIGPGPGGRLLPEVKIDKAATDESPTTEVEVKKKLSGSL
MVSVDQLNTSFGRKERANSVMSVITNTLVEELEESQRKCPPCWYKFSNTFLIWECSPTWL
KIKEIVNLIVMDPFVDLAITICIVLNTLFMAMEHYPMTPDFEDMLYVGNLVFTGIFAGEM
MFKLVAMDPYYYFQEAWNCFDGFIVTLSLVELALADVEGLSVLRSFRLLRVFKLAKSWPT
LNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKDCVCKIHADCELPRWHMN
DFFHSFLIVFRVLCGEWIETMWDCMEVAGQGMCLIVFMMVMVIGNLVVLNLFLALLLSSF
SADNLAATDDDGELNNLQISVIRIKKGIAWIKAKVRLLVASLLRKPPMEDEQKPLDDMYD
KKLNCIANHTGVDINRDLDYAKNGNGTTSGIGSSVGKYMIDEDHMSFIHNPNLTVCVPIA
VGESDFENLNTEDFSSESDIENSKDPDDTSSSEGSTIDIKPDVEEVVVVETVEEYMEPEA
CWTDACVAKYKCCEVDITMGWGKIWWYLRKTCYLIVEHNWFETLIIFMILLSSGALAFED
VYIEQRKTIRIILEYADRVFTYIFILEMLLKWVAYGFVKYFTNAWCWLDFFIVDVSIVSL
VANALGYSDLGPIKSLRTLRALRPLRALSRFEGMRVVVNALVGAIPSIMNVLLVCLIFWL
IFSIMGVNLFAGKYYFCFNETSEEYFPVDVVNNKTQCEALIEQNFTEVRWKNVKINFDNV
GAGYLALLQVATFKGWMDIMYAAVDSREVEDQPDYEVNIYMYIYFVVFIIFGSFFTLNLF
IGVIIDNFNQQKKKFGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPQNKIQGMVFDFV
TQQVFDISIMILICLNMVTMMVETDDQSDETENVLYWVNFIFIVVFTTEFLLKLFALRHY
YFTNGWNIFDVVVVILSIVGMFLADLIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRT
LLFALMMSLPALFNIGLLLFLVMFIFSIFGMSNFGYVKHGAGIDDLYNFETFGNSMIILF
MITTSAGWDGLLLPILNYPPDCNPNLENPGTSVKGDCGNPSVGIFFFVMYIIISFLIVVN
MYIAIILENFSVATEESADPLSEDDFETFYEIWEKFDPTASQFITFAKLSDFADALEHPL
RVPKPNTIELIAMDMPMVSGDRIHCLDILFAFTKRVLGDSGELDMLRQQMEERFVAANPS
KVSYEPITTTLRRKQEDVSARIIQNAYRAHLIRRGIIFKRHMFTNNKLENGSTNQEKKES
TPSTASLPSYDSVTKPDKEKQDDNKEAWARKEKDKNKKDEWESKC
NT seq
5898 nt
NT seq
+upstream
nt +downstream
nt
atggctgcaccccttctcgcaccgccaggacctgacagcttcaagagatttaatgcagaa
tcattggcggccctcgagcagcgcatcaacgaggagaagaacaggaagccgccaaagcag
gacagcagttaccgtgacgacgatgatgagaacaagcccaagcccaacagtgacctggag
gctggcaagagcctgccctacatctatggggacatccctaagggaatggtagcggtacca
ctggaggatctggacccgtactacctgaattctcagaaaacatttatagtgctaaatagg
gggaagacaatcttccgtttcagtgccacacctgccttgtacttcataaatcctttcaat
ccggttaggcaaatagctattaaaattttgatacattctcttttcagcatgatcattatg
tgtactattttgaccaactgtatattcatgaccttcagtgatcctcctgagtggtcaaaa
caagtagagtacacattcacaggaatttatacatttgagtctcttgtaaaaatcacggca
cgaggattctgtatagatggctttacattccttcgagacccatggaactggctggacttc
atggtcatctccatggcgtatataacagagtttgtaaacctaggcaatgtctcagctctg
cgcacgttcagagtgttgagggcattgaaaacaatttctgtcattccaggcctgaaaacc
atcgtgggtgccctcatccagtcggtcaagaagctttctgatgtgatgatcctgaccgtc
ttctgcctcagtgtctttgcactcatcggtctgcagctctttatgggcaacctgcgccac
aagtgtgtcatttggcccatcaacataactgaaagctacccggtcaatggcagcttcgac
tgggatgcgtacatcatgaacaacacaaatttctacttcctgcccggccaaatagatgct
cttctctgtgggaacagctcagactcgggccgttgcccggagggatacacgtgtatgaaa
gctggaagaaatccaaactatggttacaccagcttcgacagcttcggatgggccttcctg
gctcttttccgcctcatgacacaagacttttgggaaaacctctacatgctgacattgagg
gcggcaggaaagacctacatgatcttctttgtgttggtgatctttgtgggttctttctac
ttggtcaacctgatcctggctgtggtggccatggcctatgaagagcagaaccaagccacc
atggaggaggcccagcagaaggaggaggagtttaaggccatgctcgagcagctgaaaaaa
caacaggaagaagctcaaactgctgccatggcaacctcagccggaacagtatcagaggat
gcggtcgaggatgacggaggagggcggctgtcatgcagctcttctgagatgtccaagctg
agctccaagagtgccaaagagcggcgcaaccgtaaaaagaagtggcgacaaaaagagcaa
gagaaggagaaaggcgatagtgaaaagtttgtcaagtccgagtcggacgacggcagcaag
aggagccgcttccggtttcctgataaccgcctggggcgaaaatcttctattatgaaccag
tctctcctgagcataccaggctcacctttcctgtcccgccacaatagcaaaagcagcatc
ttcagtttcaagggccgtggcaaggacgtgggttcagagaacgaatttgcggatgacgaa
cacagcacggtggaggagtgcgaggagcgccggggctccctgttcagcccataccgccgc
agcagttacagtggctaccacgggaagcggaacagcacagtggattgcaacggcgtggtg
tccctcatcggccctgggcctggtggacgccttctgcctgaggtgaaaatagataaggca
gctactgacgaaagtcccactactgaggttgaggtgaagaagaagctgtctggctccctg
atggtgtctgtggaccaactcaatacctcctttgggcggaaagagcgggccaacagtgtc
atgagcgtcattaccaacacactagtggaggaactggaagagtcccagcgcaagtgtcca
ccctgctggtataaattttcaaacacattcctgatatgggaatgctcccccacatggctg
aagattaaggagattgtcaatctgatagtcatggatccctttgtggacttggccatcacc
atctgcatcgtcctcaacacgctcttcatggccatggagcactaccctatgacacccgac
ttcgaggacatgctctatgtggggaatttggtgttcactgggatctttgctggggaaatg
atgttcaaactagtggctatggatccctattactactttcaagaagcctggaattgtttt
gacggcttcatcgtgacgctgagtttagtagagctggctctagctgacgtcgaagggctc
tcagtcctgcggtcattccgactgctgagagtgtttaagctggccaagtcatggccgact
ctcaacatgctgatcaagatcattggcaactctgtgggcgctttagggaacttgactctc
gtgttggccatcattgtctttatctttgccgtggtgggcatgcagctgtttggaaagagt
tacaaagattgtgtgtgcaagatccatgctgattgtgagctgccgcgctggcacatgaac
gacttcttccactcctttctgattgtcttccgggtgctgtgcggtgagtggattgagacc
atgtgggactgcatggaagtggctggccagggcatgtgtctcatcgtcttcatgatggtc
atggtcattggcaacttggtggtattgaacctgttccttgctttgctgctgagctcattc
agtgcagacaacttggctgccacagatgacgacggcgagcttaacaatttacaaatttcc
gtcattcgcatcaaaaaaggcattgcgtggatcaaagccaaggtgcgtctactggtggcc
agcctgctgaggaaaccacccatggaggatgagcagaaacctttggacgacatgtatgac
aagaagctgaactgtattgctaaccacaccggggtggacataaaccgagatctggactat
gcaaagaacggcaatggcacgaccagtggcattggcagtagtgtgggcaagtatatgatc
gatgaagaccacatgtcattcatccacaaccccaacttgaccgtgtgcgtacccattgcg
gtgggggagtctgactttgagaaccttaatacagaggacttcagcagtgaatcagacatt
gagaacagcaaagatccggatgacaccagctcgtcagagggtagcaccattgacatcaag
ccagatgtggaggaggtggttgtggtggagacagtggaagaatacatggagcccgaagca
tgttggacagatgcatgcgtggctaagtacaaatgttgcgaagttgacatcaccatgggc
tgggggaagatctggtggtatctcaggaaaacatgctacctaatcgtggagcacaactgg
tttgagactctcatcatctttatgatcctcctcagcagtggagctctggcctttgaggat
gtgtacattgagcaaagaaaaaccatccggataatactggagtacgcagacagggttttt
acctacatcttcatcctggagatgctgctgaaatgggttgcgtatggctttgtcaaatat
ttcaccaacgcttggtgttggctggacttcttcattgtggacgtgtctatagtcagcctt
gtagctaatgcgctgggctactccgatctagggcccattaaatcactcaggacactaagg
gccttgagacccctcagagccttgtcacgttttgaagggatgagggtggtagtcaacgct
ttggtgggagccatcccttccattatgaatgtcttgctggtttgcctcatcttttggctg
attttcagtatcatgggggtcaacctgtttgcgggaaagtactacttctgtttcaacgag
acctccgaagagtactttcctgttgacgtggtcaacaacaagacccagtgcgaggccctc
attgaacaaaactttacggaggttaggtggaagaatgtcaaaatcaactttgacaacgta
ggtgccggctacctggccttactccaagtggccacattcaaaggttggatggacattatg
tatgcagctgtggattccagagaggtggaagatcagccagactatgaagttaacatctac
atgtacatctactttgtggttttcatcatctttggctccttctttaccctgaatctcttc
atcggtgttatcattgacaacttcaaccagcaaaagaaaaagtttggaggtcaggatatc
tttatgacagaggaacagaagaagtactacaatgccatgaagaaactgggctccaaaaag
cctcagaaacccatccctcgaccacagaacaagatacaaggaatggtctttgactttgtc
acacagcaagtcttcgacatctccattatgatcctcatttgtcttaacatggtcaccatg
atggtggaaacggacgaccaatcagatgaaacagagaatgtcctctactgggtcaacttc
atctttattgtggtcttcaccacggaattcttgctgaagctctttgctcttcgccactac
tacttcaccaatggatggaacatctttgacgtggtggtggtcatcctgtctattgttgga
atgttcctggctgaccttatcgagaagtattttgtatctccgacgctgttccgagtgatc
cgcttggctcgtatcggccgtatcctgcgtcttatcaaaggagcaaagggcatccgaacg
ttactctttgccctgatgatgtcacttcctgccctgttcaacattggcctcttgctcttc
ctggtcatgttcatcttctccatcttcggcatgtctaactttggctacgtgaagcatggt
gccggcatcgacgacctgtacaactttgagacctttggcaacagtatgatcatcctgttc
atgatcaccacttcggccggctgggacggcttgcttctgcccatcctcaactacccgccg
gactgtaatcccaatttagagaacccaggcacctcagtcaagggcgactgtggtaacccg
tcagtggggatatttttctttgtcatgtacatcatcatttccttcctgattgtggtcaac
atgtacattgccatcatcctggagaactttagcgtcgccacagaggagagcgctgatcca
ctgagtgaggatgactttgagaccttttacgagatctgggagaagtttgatcccactgcc
tctcagttcatcactttcgccaagctgtccgactttgctgatgcactggaacacccgctt
cgtgtcccgaagcccaacaccatcgaactgattgccatggacatgcccatggtgagcggc
gatcgcatccactgcctggacattctgtttgccttcaccaagcgtgtgttgggcgacagc
ggtgagttggacatgctgaggcagcagatggaggagcgctttgtcgcggccaacccctcc
aaggtgtcctatgagcccatcaccaccacgctgcgccgcaaacaggaggacgtctcggcc
aggatcatccagaatgcctatcgcgctcacctcatccgccgcggcatcattttcaagcgc
cacatgttcactaacaacaagcttgagaatggcagcacgaaccaggagaagaaggagagc
acgccatccaccgcctcgctcccttcgtatgacagcgtgaccaaaccagacaaggagaag
caggacgacaacaaggaggcatgggccaggaaggagaaggacaaaaacaaaaaagatgag
tgggaatctaagtgttag
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