Syngnathus scovelli (Gulf pipefish): 125988778
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Entry
125988778 CDS
T08785
Symbol
samhd1
Name
(RefSeq) deoxynucleoside triphosphate triphosphohydrolase SAMHD1 isoform X1
KO
K22544
deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03250
Viral life cycle - HIV-1
sscv04623
Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
125988778 (samhd1)
09150 Organismal Systems
09151 Immune system
04623 Cytosolic DNA-sensing pathway
125988778 (samhd1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sscv03400
]
125988778 (samhd1)
DNA repair and recombination proteins [BR:
sscv03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
125988778 (samhd1)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
SAM_2
SAM_1
HD
HD_assoc_2
PDEase_I
7TMR-HDED
Motif
Other DBs
NCBI-GeneID:
125988778
NCBI-ProteinID:
XP_049610388
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Position
2:11440810..11448461
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AA seq
643 aa
AA seq
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MASRKRGSATASPGDSFQTPGKKASVYRTQNSDVSQWGIVETCHYLRGEGLGEHETAFTD
HKITGAVLRYLKKDDLEKMGIKPVGDQLRILHSLSKLGHIEEGPQTNKVFNDPIHGHVEL
HPLLVKIIDTPQFQRLRNIKQLGATYFVFPGASHNRFEHSIGVGFLAGQLVKALKEKQRE
LSISQRDILCVQIAGLCHDLGHGPFSHMFDAKFIPKARPDISWKHEKASLDMFDHLVEKN
DLKPQMEQHGLVLPEDLDFIKELIAGPLDTTVDLQVVHTVSIITGDQGMMLMLCCQSSQW
PYRGRSKDKSFLYEIVANKRNGIDMDKWDYFARDCHNLGIQNNSDYRRYLKFARVCEVDG
EKLICTRDKEVGNLYDLFYTRICLHKRAYQHRVCTVIEIMINEAFLKADKHFQVQGSGGK
MFTLSTAIDDMEAYTKLTDSVFEQILHSSNPELAEARQILQNILQRRLYKYLGQTQAKKP
LKVTQNTINEWEAELAESVPQVGNPGVTLLPEDFVVSVIQMDYGMNQENPIDSMRFYCKT
DPTKAIPIHKHQVSKILPENFAEQLIRVYYKKTDGEGLATAQKHFIQWCMIRDFIKPQDG
DVIAPELTPLKSWSDGKEDGGDDNLGRGHSNQKAVKSLFKDKV
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atggcgagtcgcaaacgaggttcagcgacagcgagccccggagatagtttccaaacgccg
gggaagaaagcgtcagtgtatcggacgcaaaactcggacgtttcccagtggggaatagta
gaaacgtgccactacctgcgaggagaaggtcttggagagcatgaaactgcatttacggat
cataaaatcaccggtgccgtgctgcgctatctcaagaaggatgatctggagaagatgggc
attaagccagttggtgatcaacttcggattctacacagtctgagcaagctagggcacata
gaagagggtcctcaaacaaataaggtgtttaatgatcccattcacggacacgtggagcta
catcctcttcttgtcaagatcatcgatacgcctcagttccaaagacttcgaaatatcaaa
cagttgggagcgacgtactttgttttccccggagcgtcccacaaccgctttgagcactcc
atcggagtgggtttcttagcaggacaacttgtgaaagcactaaaggagaagcagcgagaa
ctttccatttctcagcgagacatcctttgtgtgcagattgctgggctctgtcacgatctg
gggcatggtccattttcgcacatgtttgatgccaaattcattcccaaagcgcgccccgat
atttcctggaagcatgagaaggcatcacttgacatgtttgatcacctggtggagaaaaat
gacctgaagccacagatggaacaacatggcctggtcctgcctgaggacctggacttcatc
aaggagctgattgcaggacctctggacacaactgtagacctccaggtagtacacactgtc
agtatcatcacgggagatcaaggcatgatgctaatgttgtgctgtcagtcttctcagtgg
ccctatcgaggccgttccaaggataagtcttttctctatgaaattgtggccaacaagaga
aacggcattgacatggacaaatgggactactttgccagggattgccataacctgggcatc
cagaacaactcggattatcgtcgctacctcaagtttgccagagtgtgtgaagtggatggg
gagaagctcatctgcactcgagataaggaagtgggcaatctgtatgatctgttctatacg
cgtatctgtctccacaagagagcttaccaacacagggtgtgcaccgttatagaaatcatg
atcaacgaggcctttttgaaggccgataaacactttcaggtccaaggctcgggaggcaag
atgttcacgctctccacagccatagatgacatggaggcctacaccaagctgacagatagt
gtgtttgaacaaattctccactcatcaaacccagagctggctgaggcacggcaaattcta
cagaacattcttcaacggcgcctctacaagtatttgggtcaaacccaagcgaagaaaccc
ctgaaagtcactcagaataccattaatgaatgggaggcggagttggctgagtcagtccct
caggtgggcaatccgggtgtcactctgctgcctgaagactttgtcgtgagcgtcatccaa
atggactacgggatgaaccaggagaaccccattgacagtatgcgtttctattgcaagact
gacccaaccaaagccattcccatacacaagcatcaggtgtccaaaattttgcccgaaaac
tttgcagagcaactgatccgagtttactacaagaagacggatggcgagggcctggccaca
gcacaaaagcactttattcagtggtgcatgatcagggacttcataaagcctcaggatggg
gatgtaattgcacccgaactgactcccttgaaaagttggtcggacggaaaagaagacgga
ggtgatgacaatttgggccgtggacattcgaaccaaaaagcagtcaagtctctttttaag
gataaggtctag
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