Syngnathus scovelli (Gulf pipefish): 125988894
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Entry
125988894 CDS
T08785
Name
(RefSeq) probable ATP-dependent RNA helicase DDX20 isoform X1
KO
K13131
ATP-dependent RNA helicase DDX20 [EC:
5.6.2.7
]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sscv03041
]
125988894
Enzymes [BR:
sscv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125988894
Spliceosome [BR:
sscv03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
SMN complex factors
125988894
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
125988894
NCBI-ProteinID:
XP_049610607
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All DBs
Position
2:21826649..21831125
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AA seq
757 aa
AA seq
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MAASVKKAAHDIETRNRTDDVILSEGIDFRSLLLSEVVLVGLSAAGFQKPSPIQLKAIPL
GRCGLDLIVQAKSGTGKTCVFCTIALDSLNLDTPATQVLVLAPTREIAVQIHSVVMAIGC
AMEGLQCHVFIGGRPVHQDKLHLKKCHIAVGSPGRIKQLIELGMLSTASIRLFVLDEADK
LLEEGSFQEQINWIFSSLPENKQMLALSATYPESLAQHLTRYMREPTFVRLNPKDMGLKG
LKQYYKLVQSHPLPHKVFEEKVQLLLELFSKLPFNQALVFSNLHTRAQHLADILSSQGLP
AVCISGSLSQEQRLEAMSKLKQYQCRVLISTDLTSRGIDAEKVNLVINLDVPQDWETYMH
RIGRAGRFGTQGLAVTYCCHGEEENTMMAIAQKCGLSLSVLPTTIDAGLMAEQCDWDVCA
EASSLALPTQQFFTNVKKKTVGSKACPTVLSPVVAKVAQEAEKPKMRHAVEELSGKPSTV
QNRLPQSFTKAVPTRKELQDALPKIPPLSSFKNCKTGFITFEEAKRDFQAFIMTGPGRSV
EIVREFSGQGDDGEPDGRREFVTLSDDGGEICQEWNRERNSKSAAKSASDSSSLEDDSED
KFNLTAGGETTEVTHPETVASRSGAVKPFTPEALETFQTMNATGSRTSPQPDNLKSMLGV
NAGAPIQRTSLAKRPKSNVQNEQWRSWKTEQKLERVDVEDDSNVESYWRDCYRAWNDFYA
SMSSFQGQPYQDYYRAAHNWMAAYRMNTVYMEELLKH
NT seq
2274 nt
NT seq
+upstream
nt +downstream
nt
atggcggcctccgtcaagaaagcagctcacgatatagaaacgcgaaacagaacagatgat
gtgattttatcggaggggattgacttcaggtcgcttttgctgtctgaggttgtgctagtt
gggctgtcagctgcaggctttcaaaaaccatctccgatccagctgaaggcgatcccgctt
ggccgatgcggacttgatttgattgtacaagccaaatctggcacaggaaagacgtgtgtg
ttctgcacaatcgctttggattctctgaacctggacactcctgccacacaggttcttgtg
ctcgctccgactcgagagatagcggtgcagatccactccgttgtcatggcgataggctgt
gcaatggagggcttgcagtgccatgtgttcatcgggggccgtcctgttcatcaggacaaa
ctccatctgaagaaatgccacatcgctgtagggtcacctggtcgtattaagcagttgatt
gagctcggcatgttatccaccgccagcattcgtctctttgttctggatgaggctgacaaa
ctgctggaggagggcagcttccaggaacaaatcaactggatattctcctctttgcctgag
aacaaacagatgctcgcgctctctgccacctaccctgaatctcttgctcaacatctcacc
cgctacatgagagagcccacttttgtcagactcaacccaaaggacatgggactcaaaggc
ctgaagcagtattacaagctggtgcagtcccatccattacctcataaggtctttgaggag
aaggtgcagctcctcctagagttgttcagtaaactgcctttcaaccaggcccttgttttc
tcaaacttgcacacaagggctcagcatctggcagacatcttgtcctctcaaggcctacct
gctgtttgtatctcaggtagtctgagtcaggagcagagacttgaggccatgtccaaattg
aagcagtatcagtgcagagtgcttatctccactgatctgacctctcggggcatagatgca
gagaaggtcaacctggtgataaatctggacgtgccacaggactgggaaacctacatgcac
cgaatcggacgtgccgggcgcttcggcacgcaggggcttgcggtgacctactgttgccat
ggcgaagaggagaacacgatgatggctattgctcagaaatgtggcctgagtttgtccgtt
ttgccaaccaccattgatgccggactgatggctgagcaatgtgactgggatgtctgcgcc
gaggcttcatctttggccctcccaacccagcagttcttcacgaatgtgaaaaagaagacg
gtgggctccaaagcgtgcccgacggttctttctcccgttgtcgcaaaggttgctcaggag
gccgagaagccaaagatgagacacgccgtggaagagctttccggaaagccgtcgactgtg
cagaacaggcttccgcagagcttcacgaaagcggtgccgactcgtaaagagttgcaagac
gcactgccaaagatccctcccctaagctcgtttaagaactgcaaaaccgggtttataacc
ttcgaggaagccaagcgagacttccaagcgttcattatgacaggaccgggaagatcagtg
gagatcgtcagggagtttagcggtcagggagacgacggggagcctgacgggcgccgagag
tttgtcacactcagtgacgatggaggcgaaatctgtcaagaatggaatcgggagcgtaac
tcaaaatcagctgcaaaatcagcctcggattcttcaagccttgaagatgactcggaagac
aagttcaacctgactgcaggtggcgagaccaccgaagtcactcaccctgagacagtggca
agtcgtagcggcgccgtgaaaccattcacaccggaagctctcgaaacattccagacaatg
aacgcaacgggcagcagaacgtcaccccaacctgacaacttgaaatcaatgctcggtgta
aacgccggcgcgccaattcagcggacgtctttggctaaaagaccaaagtcgaatgtccaa
aatgaacaatggagaagttggaagacagagcaaaaattggaaagggttgacgtggaagat
gactccaatgttgagagttactggagagactgctatagagcctggaatgatttctacgcc
tccatgtcttcttttcaagggcaaccttaccaagattactacagggcagcgcacaactgg
atggcagcctatcgtatgaacacagtttacatggaggaactgctcaaacactga
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