Syngnathus scovelli (Gulf pipefish): 125989231
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Entry
125989231 CDS
T08785
Symbol
dhx35
Name
(RefSeq) probable ATP-dependent RNA helicase DHX35
KO
K13117
ATP-dependent RNA helicase DDX35 [EC:
5.6.2.6
]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sscv03041
]
125989231 (dhx35)
Enzymes [BR:
sscv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125989231 (dhx35)
Spliceosome [BR:
sscv03041
]
Complex C
Other components
Complex C specific factors
125989231 (dhx35)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
ABC_tran
Cas3-like_C_2
AAA_30
nSTAND3
AAA_7
Motif
Other DBs
NCBI-GeneID:
125989231
NCBI-ProteinID:
XP_049611307
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All DBs
Position
2:6978140..6985555
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AA seq
699 aa
AA seq
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MAGTRSTMKFWKPGSEAPGISEERELNTETSGSTVVYNPFIALSIEKQRQKLPVFKHRNN
ILYMVESFQTVIIVGETGCGKTTQIPQYLLEAGWAAEGRVIGVTQPRRVAAISVAGRVAE
ERAARLGHEVGYTIRFDDRSDPQATRIKFLTDGILIREMMADPLLKKYSVLMLDEAHERT
LYTDIAIGLLKKIQKKRQDLRLIVASATLDAKKFHEFFNQNESGDPSKDTCGILTVEGRT
FPVDIFYTISPVPDYVKATVETVMKIHESEEAGDVLAFLTGQEEVEKVVSLLVEQARSMS
RQGMKKHLRILPMYSGLPYAEQMKVFERVPATVRKVVVATNIAETSITINGIVFVIDCAF
VKLRAYNPNTAIESLVVTPISKASASQRAGRAGRNRPGKCFRLYTEEDFEKLPASTVPEM
QRTNLAPVILQLKALGIDNVLRFSFLSPPPAQSMVQALELLYALGGLDNYGRLTDPMGMR
MAEFPLSPMFAKMLLDSGNFGCSKEIVTIAAMMQIQNIFVVPPNQKKNAARQHRKFAVAE
GDHLTMLNVYEAYMKHQKSSKWCQDHFLNYKGLQRAVMVREQLRRLMTKFKVVWTSSEGD
PDVILRCIVSGFFANAARIHHSGSYRTLRDDRELHIHPNSVLYGEKPPKWVVFNEVLQTS
KYFMRDVTAVESSWLVELAPHFYKQAQHGSLGSKRSRIL
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcacccgttccacgatgaaattttggaagccggggtccgaggcgcctgggatc
tccgaagaacgtgaactgaacactgagaccagcggttccactgtcgtctacaatcccttc
attgcactctccatcgagaagcaaagacagaagctccccgttttcaagcacagaaacaac
atcctgtacatggtcgagagcttccagacggtcatcatagtcggggaaactggatgcggg
aagacgacacagatcccccagtacctgctggaggctggctgggcggccgagggcagggtg
attggtgtgacacagcctcggcgtgtggctgctatctctgtggctggccgtgttgcggaa
gagagagctgccagattaggacatgaggtgggctacaccattcgatttgatgaccgctca
gaccctcaagcaacaaggatcaagttccttacagatggaatcttaatccgggagatgatg
gctgatcccctgcttaaaaaatacagtgtcctgatgcttgatgaagcgcatgagagaacc
ttgtacacagacatagccattggcctgctgaagaagatccaaaagaaacgtcaagacctg
cgtttgatcgtggcctccgccactctggatgccaagaaattccacgagttcttcaaccag
aacgagtctggagatcccagcaaggacacgtgtggcatcctaaccgtggagggccgcacc
ttcccagtggatattttctacactatcagtcctgtaccagattatgtgaaagccaccgtg
gaaactgtgatgaaaatacacgagtcggaggaggctggggatgtgctggcgttccttact
ggacaggaagaagtggagaaggtggtgtcccttctcgtggagcaggccaggtctatgtca
cggcaaggcatgaagaaacacctgagaattttgccaatgtattccggtttaccttacgct
gagcagatgaaggtgtttgagcgggtgcctgccacagttcgcaaagtggtggtggccact
aacatagccgagacatccatcaccatcaacggtatcgtttttgtcattgactgcgctttt
gtaaagctccgtgcgtacaatcccaacactgccattgagtcactggtggtgacgccaatc
tccaaggcttcagccagccagagggcaggaagagccggccggaaccgacctgggaaatgc
ttcagactctacacagaggaggactttgagaaattgcctgcctctactgtgccagagatg
cagcgcaccaacttggctcccgttatcttgcagctcaaagctttaggcattgacaatgtt
ttgcggttcagtttcctttcgcctccaccagctcagagtatggttcaggctttagagctt
ctttatgctcttggaggcctggacaattacggacgtctgaccgatcctatgggcatgcgg
atggcggaattccctctcagccccatgtttgctaagatgcttctggattctggaaatttt
ggctgctccaaagaaattgtgaccattgcagcaatgatgcagattcagaatatctttgtt
gttccgcccaatcagaagaaaaacgctgctcgtcagcacagaaaatttgctgttgccgaa
ggagatcacctcaccatgctgaatgtgtatgaagcttatatgaagcaccagaagagctcc
aagtggtgccaggatcattttctcaattacaaaggtctgcagcgtgccgtgatggtacga
gagcagctgcggcgcctcatgaccaagttcaaggtggtctggacttctagcgaaggtgat
cctgatgtgatcttgaggtgcatcgtgtctgggttttttgccaatgcagctcgcatacac
cactctggttcctataggactttacgagacgatcgtgagcttcacatccaccccaactct
gtactctatggagagaaaccaccaaaatgggttgtcttcaatgaagtgttgcagacaagc
aagtacttcatgcgagatgtgacagcagtggagtcgtcatggcttgttgagttggctccc
cacttctacaagcaagctcaacatggttcccttggcagcaagcgttcccgcatcctgtaa
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