Syngnathus scovelli (Gulf pipefish): 125989262
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Entry
125989262 CDS
T08785
Symbol
cntn3a.1
Name
(RefSeq) contactin-4 isoform X1
KO
K06761
contactin 3/4/5/6
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
sscv04515
]
125989262 (cntn3a.1)
00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
sscv00537
]
125989262 (cntn3a.1)
Cell adhesion molecules [BR:
sscv04515
]
Immunoglobulin superfamily
Contactins
125989262 (cntn3a.1)
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
sscv00537
]
Others
125989262 (cntn3a.1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
Ig_2
ig
fn3
V-set
Ig_DSCAM-DSCAML_C
Ig_6
C2-set_2
V-set_CD47
Pur_ac_phosph_N
Tissue_fac
Herpes_gE_N
Nuc_sug_transp
Motif
Other DBs
NCBI-GeneID:
125989262
NCBI-ProteinID:
XP_049611380
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All DBs
Position
2:20296308..20369992
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AA seq
1029 aa
AA seq
DB search
MELLWKLALLLSLLDCLAGNGHLLRPVFTKQPGSVVFPLQPGENQREVVFSCEAQGHPPP
SYRWKLNDSFIVPTSGSRYSLTGGNLHITHLSKADDSGIFQCLASNSFGTIVSREASLHI
AYLENFKTQKRNPVRVREGQGVVLLCGTPLHSGELTFTWIFNEYPSFVIQDTRRFVSQKT
GNLYIAKVEPSDVGNYTCVVTNTVTKSSVQGPPTPLMLRVDGVMGEYEPKIEVQFPEVVP
VAKSSTVKLECFALGNPVPTISWRRVDGVSSGRKVDINKANGVLEIPYFQQEDAGMYECL
AENSRGRNSVKGKLSFYAAPHLTEKPPDAQKTIDETLVWECKASAKPKPSYRWLKNGEPL
DMIEQDRIQVNNGVLTISSLSLADIGTYQCVAENKHGRVFTNAELRVIAIAPDFSQNLLK
AQTLARQSGDVLIECKPKMSPWGVISWRKGKEALRDNHRVTVLDNGSLRISNVSKMDAGL
YTCVARNQFGVASSAGSLLVKEPTVITSPAGHLDVTVGESIVLPCQVYHDPSLDLKFTWF
FNEQLIHFGSAGAYFERVGGRSAGDIMIRNIQLRHAGKYTCAVQTKVDSVSIATDVVVRG
PPGPPVDCQVTEVTETTALLTWGPGMDNHSPILSYTIQARSLFSLGWQAVSTVPELLGGK
QLSATVIDLNPWVEYEFRVLATNSIGTGEPSKASRKSRTKDTLPRVTPARVNGGGGGRSE
LVITWEPVPEELQSGPGFGYVVAFRPLGAQGWMQAAVTSPDASRYVFKNESIPPYSSYQI
KVGVYNNNGEGPFSPVATIYSAEEEPSRAPGRLRAKSISASVVEVTWKPLAWSNNRRRIL
GYELQYWGVKAKQEAASVIRTVGNKTSVHIRDLEGSSTYLIALRAYNSAGVGPQSSIVNV
TTKKPPPSQAPVKIMWNTSNSKVILHWDQVHALDNESEVTGYKVMYSQDRHSRPSVVETN
TTSLELSLPVNEDYVIQIKPFSEGGEGISSRQITIPKIADSIATGAASVSSSLPVAYLAA
VILTARTAL
NT seq
3090 nt
NT seq
+upstream
nt +downstream
nt
atggagttgctgtggaaactggcactgctgctgtcattgctggactgcctggcaggtaac
ggacatttgcttaggcctgtgtttaccaaacaacccggcagtgtggtgtttccccttcag
cctggagagaatcagagagaggtggtgtttagctgtgaggcccagggccatcccccgccc
tcatacaggtggaagcttaatgactctttcatcgtgccaacatcggggtcaagatattcc
cttacgggaggaaatttacacattacccatctgagtaaagcagacgattctggcatattt
cagtgtctggcatcaaactcatttggcacgatcgtcagcagagaggccagtcttcacatt
gcctacttggagaatttcaagactcaaaaaagaaatccagtgagagttcgtgaaggccaa
ggagtggtcttactgtgtggcacaccactccactctggagagcttaccttcacatggatc
ttcaatgagtacccatcgtttgtcatccaggacacgcggcgattcgtgtcacagaagaca
ggcaacctctacattgccaaagttgaaccctcggatgtgggcaactacacttgtgtagtt
accaacacagtcaccaaaagcagtgttcaaggaccacccacaccccttatgcttcgagta
gacggtgtaatgggtgaatatgagccaaagattgaggtgcagttccctgaagttgtccca
gtcgccaagagctcaactgttaaactggaatgttttgcgcttggaaacccagtgccaacc
atcagttggaggagagtcgatggagtctcttcgggaagaaaagtggacatcaataaagcc
aacggagtgttagagatcccttactttcaacaggaggatgcagggatgtatgaatgtttg
gctgaaaacagcagaggcaggaactctgtaaaaggaaaactgtccttctatgctgctcct
catttgactgagaagcccccagatgctcagaagactattgatgaaactctggtgtgggag
tgcaaagccagtgccaagcctaaaccctcgtaccgctggctgaagaatggagagcctctg
gacatgatcgagcaggaccggattcaggtgaataatggagtgttgactatcagcagcttg
agtctggctgacattggcacgtaccagtgtgtggctgagaacaagcatggaagagtattc
accaatgctgagcttcgagtcatagccatcgctccagacttctcacagaatttgttgaag
gcccaaactctggcgcgacagagtggtgatgtcctgatcgaatgcaagcccaagatgtct
ccttggggtgtgatttcgtggaggaaaggaaaagaagccttgagagacaaccacagagtt
actgtgctggataatggaagtcttcgcatatccaacgtctctaaaatggatgccggtctg
tacacatgcgtagccagaaaccagtttggcgtagcaagcagcgccggtagccttttggtt
aaagagccaactgtgatcacaagcccagccggtcatctagatgtgacggtgggggaaagc
attgtgctgccatgccaggtttatcatgacccctcgctggatctcaagttcacatggttc
ttcaatgagcagctcatccactttggcagcgctggagcttattttgaaagagttggtggg
cgctcggccggggacataatgatccgcaatattcagctcaggcatgctgggaaatacaca
tgtgcagttcagaccaaggtggacagtgtctctattgccactgatgtggtggtcagaggt
cctccagggccccctgtggactgtcaagtgactgaggtgacagagaccacggcactcttg
acctggggacctgggatggacaaccacagccccattctcagctataccatccaggccagg
tcacttttttcgctcgggtggcaagccgtttccactgttcctgagctgctcgggggaaag
cagttgtcagccactgtcatcgacttgaatccctgggtggagtacgagttcagagtactg
gcaaccaacagcatcggaacaggagagcccagtaaagcctctagaaagtcccgcaccaag
gacacacttcccagggtgactccggctagagtgaatggtggtggagggggacgttcagaa
ttggtcatcacttgggagcctgttccagaggagctgcagagcggccccgggtttggctat
gtggtggctttccgcccactgggtgcacagggctggatgcaggctgctgtcacatctcct
gacgcctccagatatgtcttcaagaatgagagcattcccccttattcatcttatcaaatc
aaagtcggggtttacaacaacaacggagaagggccttttagtcctgtggcaaccatctac
tcagcggaggaagagcccagcagagcaccagggaggcttagggcgaagagcatctcagca
tctgtggtggaggtcacctggaagcctctggcctggagcaacaatcgcagacgcatcctg
ggctatgagttgcagtactggggggtaaaggcgaagcaggaggcggccagtgtgattagg
acggtggggaataagacatcagtgcacatcagagatctggagggcagcagtacctatttg
atagctctgcgggcttataacagcgctggagtgggtccacagagcagcattgtcaatgtc
accaccaagaagcctccacccagtcaggctcccgtcaaaatcatgtggaacacttccaac
tccaaggtcatactgcactgggaccaagtacacgctctggacaatgagtctgaagttacg
ggttataaggtgatgtacagccaggatagacacagccgtcccagcgtggtggagaccaac
accacatccttagagttgtcgctgcccgtcaacgaggactacgtcatccagattaaacct
ttcagcgaaggtggggagggcatcagcagtcgacagattacaatccccaagatagcagat
tccatcgccacgggagctgcctcggtgtcttcatcacttcctgtggcctaccttgctgct
gtcatcctcacagccaggaccgcgctatga
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