Syngnathus scovelli (Gulf pipefish): 125989287
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Entry
125989287 CDS
T08785
Symbol
vps16
Name
(RefSeq) vacuolar protein sorting-associated protein 16 homolog
KO
K20180
vacuolar protein sorting-associated protein 16
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04140
Autophagy - animal
sscv04148
Efferocytosis
sscv05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
125989287 (vps16)
04148 Efferocytosis
125989287 (vps16)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
125989287 (vps16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sscv04131
]
125989287 (vps16)
Membrane trafficking [BR:
sscv04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
125989287 (vps16)
Hops complex
125989287 (vps16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps16_N
Vps16_C
NMD3_OB
Motif
Other DBs
NCBI-GeneID:
125989287
NCBI-ProteinID:
XP_049611439
LinkDB
All DBs
Position
2:10418999..10425941
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AA seq
839 aa
AA seq
DB search
MYSMALITANWNPMEDAFYRKTELYEMSWKLRDGLKDCLVAAAPYGGPIALLREPQRRSP
SSRPQLEIYSASGIAIASFPWKSGPVIQLGWTVSDELLCIQEDGSVLIYDLFGSFKRHFS
MGQEVVQSQVLEAKVFHSPYGTGVAIVTGSFRFILATNITDLKLRRLPAVPGLQAAPSCW
VVLTQDRQTKVLLATGSDLYILDNTSCTSVCAPGLSPQLGNIVQMSASFNYKYLALFTDT
GHLWTGLAQLQSKLSEVDTKVRTPPKQMVWCRRPKSQQPSVVMVWDHLLLVVGVCNDIIQ
FPLESRCVCVGELDGVRIISSTNQELLQEVPIVCQDIFKIASMAPGALLLEAHREYEKSS
QKADEYLREIKEQGMLGEAVRQCVEAAGHEYDSNTQKSLLRAASFGKCFLTDFSPDHFVA
TCRELRVLNAVRECSVGLPLTHTQFKQMTLQVLIDRLVYRQLYQLAIEICRYLKIPDYQG
VSRVLKHWAACKVQQKELSDEAIARAVCQKVGDSLGVSYSHIAAKAFECGRTELAIKLLD
SEARSGEQVPLLLKMKRSQLALSKAVESGDTDLVYMVVTHLKNEMNRGDFFMTLRNQPVA
LSLYRQFCKLQEQETLRDLYNQDDDHQELANYYVATSYREKRLDSRLSHLQSAVDEYNKA
KNEFASKATEDEMRLLRFQKKLDDEKGTGLMGLSLQATMETLLMLGLYKQTDQLYRDFKV
PDKRYWWLKLKSLAEKEEWEELEKFSKSKKSPIGYLAFVEVCIKKNNKYEAKKYVSRVTL
EQKVKAHLAIGDLEGAADAAIERRNEAEISAVLARCSTTDRLLSDKLNRAKLSTAKKRP
NT seq
2520 nt
NT seq
+upstream
nt +downstream
nt
atgtacagcatggctctaataacagccaactggaatccgatggaagacgctttttatcgt
aaaacagagctgtacgagatgagttggaaactgagagatggattgaaagactgcttagtt
gcggcggcaccttacggcggacctatagctctcctaagagaaccccagagacgttcccca
agttctcgtcctcaattggagatttattctgcttctggaatcgccattgccagtttcccg
tggaaaagtggtcctgtgattcagctggggtggacagtctccgatgagttgttgtgtatt
caagaagatggttctgttctgatttatgacctgtttgggtccttcaagaggcacttcagc
atgggacaggaagtggtgcagtctcaggtcttagaagccaaggtgttccattctccctac
gggacaggcgttgccattgtcacgggatcttttcggttcatcttggcaactaacatcact
gatttaaaacttagaaggttacccgccgtcccaggcttgcaggcggcgccgtcctgttgg
gttgtcctcacccaagatcgccagaccaaagtcttgttggccactggatctgatctctat
atcctggacaatacttcctgcacttctgtgtgtgctccaggactcagtcctcagttgggc
aacatcgtccaaatgtcggcgtcgttcaactacaaatatcttgcgctcttcactgatacc
ggacacctatggacgggcttagcccagcttcagagcaagctgagtgaggtcgacaccaaa
gtgaggacaccacccaagcagatggtctggtgtcgcagaccaaaatcccagcaaccgtct
gtggtgatggtgtgggaccacctcctcctggtggtcggagtgtgcaacgacatcatccaa
ttcccactagaaagtcggtgcgtgtgtgttggtgagctggatggcgttcgaatcatcagt
tcaaccaatcaggagctgctgcaggaggttccgatcgtctgtcaggacatcttcaaaatc
gcttcgatggccccgggagcattgttgctggaggcccaccgcgagtatgagaagtccagt
caaaaagctgatgagtacctgcgggaaatcaaggagcaaggcatgctaggagaggcggtt
agacagtgtgtggaggcggcaggtcatgaatatgactccaacacccagaagtccctgctg
cgggcggcatcctttggtaagtgtttcctgacagacttcagtccagatcattttgtagcc
acctgtcgagagctgcgcgtcttgaatgccgtcagagagtgcagtgttggtctgccactc
acgcacacacaattcaaacagatgaccctccaggtgctgattgacaggttggtgtaccgc
caactgtatcagttggcgatcgaaatttgccgttacctgaagattccagattatcagggg
gtcagcagagttctcaagcactgggccgcctgtaaagtccagcagaaggaactatcggat
gaagccatagccagagcggtgtgccagaaggtgggagactcactgggggtgtcctactca
cacatcgctgcaaaagcctttgaatgtggacgaacagagctcgccatcaagctgttggac
tcggaggctcggtctggtgagcaagttcctcttctactgaagatgaagaggagtcagctg
gctctcagtaaagctgtagagagtggcgacactgacctggtttacatggttgtgactcac
ttgaagaatgagatgaacagaggagatttcttcatgacactaagaaaccagcctgtcgct
ctgagtctctacagacaattttgtaaactgcaagaacaagaaactctgagggatctttac
aaccaggatgatgaccaccaggagctggccaattattatgttgccaccagctacagggag
aagaggttagacagccgtttgtctcacctgcaaagtgccgtcgacgaatacaacaaagcc
aaaaatgagtttgcctccaaggccaccgaagacgagatgcgtctcctccgtttccaaaag
aaactggatgacgagaaggggactgggctgatgggcttgtcacttcaggcaaccatggaa
accctgctcatgttggggctttacaagcagacggatcaactttacagagacttcaaagta
cctgacaagaggtattggtggctgaaacttaagtctttggcagagaaggaggaatgggaa
gagttggagaagttctcaaagagtaaaaagtccccaatagggtacctggcctttgtggag
gtctgcatcaagaaaaataataagtatgaggccaagaagtacgtttccagagtgacgctt
gagcagaaggtcaaagctcacctagccatcggcgaccttgagggggctgcagatgcagcg
attgagcgcaggaacgaagcagaaatatcggcagtcctcgcaagatgctccaccacggat
aggctgttgagtgacaagttaaatcgagccaaattgtccactgccaaaaagagaccctag
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