Syngnathus scovelli (Gulf pipefish): 125989310
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Entry
125989310 CDS
T08785
Symbol
ddx4
Name
(RefSeq) probable ATP-dependent RNA helicase DDX4
KO
K13982
probable ATP-dependent RNA helicase DDX4 [EC:
5.6.2.7
]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sscv03036
]
125989310 (ddx4)
Enzymes [BR:
sscv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125989310 (ddx4)
Chromosome and associated proteins [BR:
sscv03036
]
Eukaryotic type
Gene silencing
piRNA pathway
125989310 (ddx4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
125989310
NCBI-ProteinID:
XP_049611486
LinkDB
All DBs
Position
2:complement(11167980..11174127)
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AA seq
603 aa
AA seq
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MDSFNEQEFESSTSQDCSRGGRRGRGRGRGFASSFSSETDSWKSPGGEREAFRGRGRGRS
FVGNGQNQFNEENGSTQDNDFSRGRRGRGSFREGGFGGGYRGNNEEILTRADTKEPEPEN
SDGSVRPKVTYVPPALPEDEDSVFAHYQQGINFDKYDDIVVDVSGTNPLPAIMTFQEATL
CDSLRKNISKSGYSKPTPVQKHAIPIISAGRDLMACAQTGSGKTAAFLLPILQQLMADGV
AASSFSEQQEPEAIIVAPTRELIHQIFLEARKFSYGTCVRPVVVYGGVNTGFQLREISKG
CNIVCGTPGRLLDVIGRGRIGLTKLRYLVLDEADRMLDMGFEPDMRRLVGSPGMPPKENR
QTLLFSATYPEDIQRLAADFLKTDYLFLAVGIVGGACSDVEQTFVQVTKFSKREQLLDLL
KTTGNERTMVFVETKRQADFIATFLCQEQLPTTSIHGDREQREREQALADFRTGKCPILV
ATSVAARGLDIPDVQHVVNFDLPNNIDEYVHRIGRTGRCGNVGRAVSFYDPDSDSQLAPS
LVTILSKAQQEVPSWLEESAFSGGATSFNQAKNSFASFDSRKGGGDRSQPVPQVAVADDD
DWE
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atggattctttcaatgaacaggaatttgagagcagcacctcccaggattgcagtcgtggt
ggaagaagaggaagagggagaggaagaggatttgcgagctccttttcttccgaaacggac
agctggaaaagtcctgggggagaaagagaagctttcagaggaagaggcagaggtcggagc
tttgttggaaatggtcagaaccaatttaatgaggaaaatggttcaacccaggataacgat
ttcagtagaggaagacgtggccgaggaagcttccgtgaaggtggctttggaggaggatat
cgtggaaacaatgaggaaatcctcacccgagcagatactaaggagccagagccagagaac
tctgatggtagtgtccgaccaaaagtcacctatgttcctccagccctccctgaagatgag
gactctgtgtttgcgcactatcagcaaggcattaattttgataagtatgacgacatcgtt
gtggatgtgagtggaaccaacccactgcctgccatcatgacttttcaggaggcaaccttg
tgtgattccttgcgaaaaaatatcagcaaatcgggttattcaaagcccaccccagttcag
aagcacgccattccaattatctctgctggtcgagatctcatggcctgcgcccagaccggt
tctggaaaaacggctgctttcctacttccaattctgcagcagctaatggctgacggtgtg
gctgccagcagcttcagtgagcagcaagagcctgaggcaatcattgttgccccaaccagg
gagctcatccaccagatttttctggaggccaggaagttttcctacggaacctgtgtgcgt
cctgtggttgtgtacggtggagtgaatactggatttcagctcagagaaatttccaagggt
tgcaacatagtgtgtggaacaccaggaagattgttggatgtaattgggcgtggaaggatt
gggctgaccaaactgcggtatctggttctggatgaggctgacaggatgttggacatgggc
tttgagcctgacatgcgccgccttgtcggttcacctgggatgccacccaaagagaaccgt
cagacgctgctttttagcgccacctatcctgaagacatccaaagactggctgctgacttc
ctcaagacagactatttgttcctggctgttggcatcgttggtggggcctgcagcgatgtt
gagcagacattcgtccaagtcactaagttctcaaagagagagcagctacttgacctgctt
aagaccactggaaatgaacgcacaatggtgtttgtggagacaaagagacaagctgatttt
attgctacttttctgtgccaagagcaacttcccacgaccagtattcacggagatcgcgaa
cagcgtgaacgagagcaagccttggctgacttcaggaccggcaaatgtcccatcctcgtt
gcgacatcggtcgctgcccgcggactggacattccagatgtgcagcatgtggtgaatttt
gatcttcccaacaacatcgatgaatacgtccaccgcatcggcagaaccggccgatgcggt
aatgttggcagggccgtgtccttctacgatccggacagcgacagtcagctggctccttcc
ttagttacgatcctatccaaggcacaacaagaagttccatcatggttggaggaatctgct
ttcagtggaggggccactagctttaaccaggccaaaaatagttttgcctccttcgactct
aggaagggaggaggtgacaggagccagccagttcctcaggtcgcagttgcagatgatgat
gactgggagtag
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