Syngnathus scovelli (Gulf pipefish): 125989397
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Entry
125989397 CDS
T08785
Symbol
rbm39b
Name
(RefSeq) RNA-binding protein 39b isoform X1
KO
K13091
RNA-binding protein 23/39
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sscv03041
]
125989397 (rbm39b)
Spliceosome [BR:
sscv03041
]
Common components
Common spliceosomal components
General mRNP proteins
125989397 (rbm39b)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_occluded
RRM_5
RRM_8
Transformer
Motif
Other DBs
NCBI-GeneID:
125989397
NCBI-ProteinID:
XP_049611692
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Position
2:complement(1990147..1995190)
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AA seq
516 aa
AA seq
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MADEFDVEAMLEAPYRKDEVKSSHANGHDGQNRKKRRSKSRSPASKKRRSRSRSKDRKKA
KKRSRSRERKQSRNREHRRSRSKERAGRYKARKSPIRKRSKSRTPPVKKEKSPIRQPIDN
LTPEERDARTVFCMQLAARIRARDLEDFFSAIGKVRDVRMISDRNSRRSKGIAYIEFVES
SSVPLAIGLTGQRLLGVPIIVQASQAEKNRAAAAAASNLQKGSAGPMRLYVGSLHFNITE
EMLRGIFEPFGRIEGIQLMMDSETGRSKGYGFISFADAECAKKALEQLNGFELAGRPMKV
GHVTERSDASTASSFLDNDELERTGIDLGTTGRLQLMARLAEGTGLKIPPAAQQALQMTS
SASYGNVAPPSSKSQRPLKLITRLVAHHESFAAPAPSQALNLPSQPLATHCLQLSNLFNP
QAENDPSWAIEIQDDVIEECNKHGGVVHIYVDKNSAQGNVYVKCPSIPAAMASVNALHGR
WFAGKMIKAAYVPLPTYHNLFPDSVTAKQLLMPTRR
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atggctgatgagtttgatgttgaggccatgctggaggcgccatacagaaaggatgaggtc
aagtcttctcatgcaaatggacacgatggacagaacaggaagaagaggcggagcaaaagc
agaagcccggcctccaagaaaaggaggagccggagccgaagcaaagacagaaaaaaagcc
aagaagaggagcaggagccgggaaagaaagcaaagccgcaaccgggaacaccggcgctct
cgaagcaaagagcgagctggccgctacaaagccagaaagagcccaatacggaagcgttcc
aaaagccgcacgcctcctgtcaagaaagagaagagtcccatcagacaacctatcgacaac
ctaacaccagaggagcgagacgcccgcacagttttctgcatgcagctggctgctcgaatc
agagctcgagacttggaggatttcttctcggctattggaaaagtaagagacgtgagaatg
atatcagaccgcaattcccggagatcgaaggggatcgcctacattgagtttgtggagtcg
tcttctgtgcccctggccattggactgacgggccagcggcttttgggagtgcccatcatt
gtccaggcatctcaggccgagaagaatcgagctgccgcagcggcggccagtaatcttcag
aaaggcagcgcgggtcccatgcggctctacgtgggctcgctgcacttcaacatcactgag
gagatgctgcgagggatctttgagcccttcggaaggattgagggaattcaacttatgatg
gacagtgagactggacgctcgaaaggatatggcttcatatcatttgcagatgccgagtgt
gcaaaaaaggccctggagcaactgaacggctttgagctggccggccggccgatgaaggtc
ggccacgtcacggagcgctcggacgcgtccaccgccagctccttcctggacaacgacgag
ctggaacggaccggcatcgacctcggcaccactgggcgactgcagctcatggcgcgactc
gctgaaggaaccggtctaaagattcccccagctgctcagcaggcacttcagatgactagc
tcggcatcttatgggaacgtggcgcccccgtcaagtaagtcacaacgaccacttaaattg
atcacacgattggttgctcaccatgaatcttttgcagctcccgcaccaagccaagctttg
aaccttccttctcagccgctggccactcactgccttcagttatccaatctcttcaaccca
caagcagaaaacgatcccagctgggccatcgagatccaagatgatgtcattgaggagtgt
aacaagcacggaggagtcgttcacatttatgtcgacaagaactctgctcagggtaacgtg
tacgtcaagtgcccctccataccggcagcaatggcctccgtaaatgcgcttcacggacgc
tggtttgcaggtaaaatgatcaaggcggcctacgttcccttaccgacataccacaacctt
ttcccggattcagtaacagcaaagcagcttctaatgccgacacgtcgataa
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