Syngnathus scovelli (Gulf pipefish): 125989852
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Entry
125989852 CDS
T08785
Symbol
fdft1
Name
(RefSeq) squalene synthase isoform X1
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv00100
Steroid biosynthesis
sscv01100
Metabolic pathways
Module
sscv_M00101
Cholesterol biosynthesis, FPP => cholesterol
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
125989852 (fdft1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
sscv01006
]
125989852 (fdft1)
Enzymes [BR:
sscv01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
125989852 (fdft1)
Prenyltransferases [BR:
sscv01006
]
Terpene biosynthesis
Squalene/phytoene synthase
125989852 (fdft1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
Octopine_DH
HAUS4
Motif
Other DBs
NCBI-GeneID:
125989852
NCBI-ProteinID:
XP_049612208
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All DBs
Position
20:11624342..11628379
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AA seq
457 aa
AA seq
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MATGACCKCPISLAVFKRSLSVAPRGPTPACPRSLLPGRRLGERGLRGAARSSCVPRATG
FGRHAALCCLSCQESMSQSLRTCYVYLNQTSRSFAAVIQALDGELRHAVCIFYLVLRALD
TVEDDMSIPLDKKVPMLNDFHTYLYQDAWSFSESQEKDRQVLEDFPTISLEFRNLAEEYR
VVISDICRRMGVGMAEFLEKKVGSMKEWDKYCHFVAGLVGIGLSRLFSASQLEEPEVGWD
TDLANSMGLFLQKTNIIRDYLEDTKEGRAFWPQEAWSQFAGRLEDLAQPEKLESALSCLN
LLVTDALRHVPDVIAYLARLRNQSVFNFCAIPQVMAIATLSSCYNNPLVFQGVVKIRKGQ
AVTLMMEATNMRAVQNIISQYSQEILHKVSLADPSRDETLRILALIREKSQSSDLPVRSQ
HLSPVYLSAAMLLAAVSWQYLSTTAARAQGAGDMQGQ
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atggccactggagcgtgctgcaagtgccccatctcgctggccgtgttcaagcgctctctg
tcggtggcgccacggggcccgacgcccgcctgtccccgctcgctgctgccgggccgaagg
ctgggcgagcggggcctgcggggagccgcgcgctcgtcctgcgtcccgagagcgacgggc
ttcggtcgtcacgcggccttgtgttgtctgtcgtgccaggagtccatgagccagagcctg
aggacgtgttacgtgtacctgaaccaaaccagcaggagctttgcggctgtcattcaggcc
ctggacggcgagctaagacacgccgtgtgcattttctacctggttctccgggcgttggac
acagtggaggacgacatgagcatccccctggacaaaaaagttcccatgctgaatgatttc
cacacctacctgtaccaggacgcctggagcttcagcgagagccaggagaaagaccggcaa
gttctggaggacttccccacgatatctttggaattccgaaacctggctgaagaatatcgg
gtggtcatctcggacatctgccgccggatgggagtcggaatggcggaattcctggagaag
aaagtcggatccatgaaggagtgggacaagtattgccactttgtggcggggctggtgggc
ataggcctgtctcgcctcttctcggcgtcccagctggaggagccggaggtgggctgggac
acggacttggccaactccatgggcctgttcctccagaagaccaacatcatccgagactat
ctggaagacaccaaggagggacgtgccttctggccacaagaggcgtggagccagtttgcg
ggccgtctggaggacctggcgcagcccgagaagctggagtcggctctgtcctgtctcaac
ctgctggtcacagacgcgctgcgtcacgtgccggacgtcatcgcctacctggcccgccta
cgcaaccagagcgtcttcaacttttgcgccatccctcaggtgatggcgatagctacccta
tcatcgtgctacaacaacccgctggtgttccagggggtggtgaagatccgaaaggggcag
gccgtcacgctcatgatggaggccaccaacatgcgagccgtgcagaacatcatcagccag
tacagccaggagattctgcacaaggtctcgctggcggacccgtcgcgggacgagacgctg
cgcatcttggcgctcataagggagaaatcgcagtcgtcagacctgcccgtcaggagccag
cacctgtcgcccgtgtacctgtcggccgccatgctgctagcggccgtcagctggcagtac
ctgagcaccacggcggcgcgggcccaaggtgccggcgacatgcagggacagtag
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