Syngnathus scovelli (Gulf pipefish): 125990026
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Entry
125990026 CDS
T08785
Symbol
ptchd4
Name
(RefSeq) patched domain-containing protein 1
KO
K24682
patched domain-containing protein
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
sscv04990
]
125990026 (ptchd4)
Domain-containing proteins not elsewhere classified [BR:
sscv04990
]
Other domain-containing proteins
Patched domain-containing proteins
125990026 (ptchd4)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Patched
Sterol-sensing
NPC1_MLD
Motif
Other DBs
NCBI-GeneID:
125990026
NCBI-ProteinID:
XP_049612569
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All DBs
Position
20:7106143..7118536
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AA seq
919 aa
AA seq
DB search
MCFIGGDGASASWILWRMLRQVIHRGLKASFYWLGLFVSRHPVFFLTVPAVLTIIFGSTV
LSRFKPETDLELLVAPTHSLAKIERSLANSLFHIDQSKHKLYSDLHTPGRYGRLILLAKS
GGNILEVADQVLQVHKQVLDLRVNYKGFNYTFAHLCVLSHRDKSCMLDDIITIFEDIRQA
VLSNSTFHKVPVSYPNTTLKDGRVSFIGHQLGGVSFSPNSRDQQVKFASAVQITYYLRNN
GPVVQDAIAERWENEFCALVTRLSTAEAPHGPDQLHIHSLTSFSLWRDFHQTGVLAKGEV
LVSLVLVLLAATISSSMRDCLRGKPFLGLLGVLTICIANVTAAGIFFISDGKFNSTLLGI
PFFAMGHGTKGVFELLAGWRRTRENLPFKERVADAFADVMVCYTMTSSLYIITFGMGASP
FTNIESVKIFCQSMCVAILVNYFYVFSFYGSCLVFAGQLEQNRYHSVFCCKIPSVEYLDR
QPTWFKTMMSDGHDLSTHHDSVPYQNHFIQHFLREHYTEWITNTYVKPFVVILYLIYASF
SFMGCLQISDGSNIVNLLASNSPSVSYALTQQRYFSNYSPVIGFYIYEPIEYWNSTVQEH
LKTLSHGFNKISWIDNFFHYLRVVNVSASTKSDFVNILKSSFLRSPEYQHFTEDIIFSKN
RDTKEYDIIASRMYLVARTTEKKREEVVELLEKLRPLMLIDGIKFIAFNPTFVFMDRYSS
SVISPILTSGFSVLTILILTFFLVINPLGNFWLILTVTSVELGVLGLMTLWSVGMDSISI
LCLIYTLNFAMDHCAPHLYTFVLATEHTRTQCIKLALEEHGAAILQNTSCFVIGILPLVF
VPSNLTYTLFKCSLLTAGCTVLHCFVILPVFLTFFPPSKKRHKKKKRAKRKERERERERE
REEIECIDVRENPDHVTNV
NT seq
2760 nt
NT seq
+upstream
nt +downstream
nt
atgtgcttcatcggaggagacggagcatctgcaagctggattttgtggaggatgctgcgg
caagtgatacacagagggctcaaggcttccttctactggttaggcttatttgttagcaga
caccccgttttctttctcaccgtgcccgcggttctcaccatcattttcggatctacggta
ctgagccgattcaagccagagacggaccttgagctgctggtggcaccgacgcacagcctg
gcaaagattgagcgaagtctggccaacagcctctttcacatcgaccagtctaagcacaag
ctgtactcggatttacacaccccgggcagatatggtaggctgatactgctggccaagtcc
ggggggaacatcttggaggtggccgatcaggtgctgcaagttcacaagcaagtgttggat
ttgcgagtcaattacaaaggattcaactacacattcgcgcacctctgcgtgctgagccac
agagacaagagctgcatgctggatgatatcatcaccatcttcgaagatatcagacaggcg
gtgctttccaacagcactttccacaaggtgcccgtcagctaccccaacacgacgttaaag
gatggtcgagtgtccttcatcggtcatcaactgggaggcgtgtccttctcacccaacagc
cgggaccaacaagtcaagttcgccagtgctgtccaaattacctactacctccgcaacaat
ggacctgtggtgcaggatgccattgcagagcgctgggagaatgagttctgcgccctggtc
actcggctgtcaactgccgaagctcctcacggaccagaccagctccacatccactccctc
acctccttcagcttgtggcgagacttccatcagacaggtgtgctagccaaaggggaagtg
ttggttagcctggtgctggtgctcctggctgccaccatatccagctccatgcgggactgt
ttgagggggaaacccttcctaggcctcctgggggtgttgaccatctgtattgccaacgtg
acagccgcagggatctttttcatatcagatggcaaattcaattccacactcctcgggatt
ccattctttgctatgggtcatggaaccaaaggggtattcgaacttctggcaggctggagg
agaacaagggaaaacctgcctttcaaggaacgcgtggctgatgcttttgccgacgtgatg
gtgtgctacaccatgaccagctctctctacatcatcacattcggcatgggagcgagccct
ttcaccaatattgagtcagtgaagattttctgccagagcatgtgtgtagccatcttggtc
aactacttctacgttttctcattctacggctcctgcttggtgtttgctggacaactggag
cagaaccgctaccacagtgttttctgttgtaaaattccttcagtggagtatctggaccgc
caacccacttggtttaaaaccatgatgagtgatggccacgacctctcgactcaccatgac
agtgtcccttaccagaatcactttatccagcattttcttcgcgaacactacacagagtgg
attaccaacacctatgtcaaaccctttgtggttattctctatctcatctacgcttcgttt
tcattcatgggatgtttacaaatcagcgacggttccaatattgtaaaccttctggcgagt
aactctccgagtgtttcatatgcgctgactcagcagagatatttcagcaactacagtcct
gtgattggcttttacatttacgagcccattgagtattggaactccacagtgcaggagcat
ttgaagacactcagtcacggcttcaacaagatctcttggattgacaattttttccactat
ctacgtgtggtgaacgtgagcgcatcaaccaagagcgactttgttaatattctcaaaagc
tcgttcctgcggagccccgagtaccagcatttcacagaggacatcatattctccaaaaac
cgtgacacaaaagagtacgatatcatcgcctcgcgcatgtatttagtggcacggaccacg
gaaaagaagcgtgaggaggtggtggagcttctagagaagcttcgccctctcatgttgata
gacggtatcaaattcattgcctttaatccaacatttgtgttcatggaccgctacagttcc
tctgtcatctctccaatcctaacctcaggctttagtgtactcaccatccttatccttacc
ttcttccttgtcattaaccccttagggaacttctggctcatcctcaccgttacgtcagtg
gagttgggcgtcttaggtctgatgactctttggagtgtcggtatggacagcatctcaatc
ctgtgccttatttataccctgaacttcgccatggatcactgtgcaccacacttatacacg
tttgtgttggccaccgagcacacgaggacacagtgcatcaagttggcactagaggagcac
ggtgcggccatcttgcagaacacatcctgctttgtgattgggatcctacctttagtgttt
gtgccttccaatctgacctacacactgttcaagtgctcgctcctcacggccggctgtacc
gtacttcactgcttcgtcatcttgcccgtcttcctcaccttcttcccgccatccaaaaag
agacacaagaaaaaaaagagggccaagcggaaagaacgggaacgcgaaagggaacgtgaa
agggaggagatcgagtgtattgacgttagagagaatcctgatcacgtgacaaatgtctga
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