Syngnathus scovelli (Gulf pipefish): 125990045
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Entry
125990045 CDS
T08785
Symbol
ntn5
Name
(RefSeq) netrin-1
KO
K06843
netrin 1
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
125990045 (ntn5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
sscv00536
]
125990045 (ntn5)
Glycosaminoglycan binding proteins [BR:
sscv00536
]
Heparan sulfate / Heparin
Axon guidance molecules
125990045 (ntn5)
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GFIT
Motif
Pfam:
Laminin_N
NTR
EGF_laminin
EGF_LMN_ATRN
F5_F8_type_C
DUF7630
Motif
Other DBs
NCBI-GeneID:
125990045
NCBI-ProteinID:
XP_049612633
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All DBs
Position
1:complement(27007162..27017966)
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AA seq
774 aa
AA seq
DB search
MMFRIFSLPPPTSPFLAFLLLYLLPRPLLFSSLSHVPLSWASPHDPCYHPDGRPRHCLSE
FINAAYGVSVDARRSTRAFDGNVTTLTDLHNPHNLTCWQAQGGQDSGDWVLTVPLGRRFE
ITYISLQFCYHGEPSDPISISIFKSMDYRHTWRAMQHYSSDCLGDFGLPSQTVAQTRHQE
TEPLCSDPRPLQRQRGGMVLAFSALDGRPSSPDFDYSPTLQDWVTATDIRVVFHQTSAGT
KLSSGVKNDGRTEEGRVVDLLRWSSGAAGDPIGNVPSFNNRATTNSEMSTQKKAGKLRGR
SHHKVGNNVTSKESGDTYSSEVESARKLGRKKDGEEWLLCPNGDCNWTGRQRAAKGRELR
KRRNNHPNIPQTSRNLQAALAASQAPPTVPSLPPLALSDLQVGGRCKCNGHASKCRRDDA
GRAVCVCKHHTAGPDCDVCEDFYFDRPWHRATPTHPNPCVACECNGHSSKCRFSMEVFQQ
SGRRSGGVCLKCRHHTAGRHCQYCHNGYTRDQSKPLHHRKACQPCQCHPLGAVGRSCNNT
SGQCLCRQGVTGLRCNRCAPGYKQGTSPLRPCVRIQEITPTPVFQPQYGIDEECVSHCQP
SQGKVRMNLDTYCLKDYVLKVQVRGMERSGPWWQFSISVQVVFRTGSATRIRRGPQSLWV
PDRDLTCGCPALHVGRTFLLIGADEGERDRAPDERRLVADRSTLALQWREHWSPKLRGFR
GQDKKGRCADRPPNQDRNPSEPQTGYIPPHLLADTDNGSSSGEVSTLSPQHSHS
NT seq
2325 nt
NT seq
+upstream
nt +downstream
nt
atgatgttccggatcttttccctcccccctcctacctctcccttccttgctttcctcctc
ctttatcttcttcctcggcctctgctcttctcctcgctgtcccacgtcccgctgagttgg
gcttcgcctcacgatccctgctaccacccggacggtcgtcctcgccactgtttgtccgag
ttcatcaacgccgcctacggggtctcagtggacgccaggcgctccacccgagcttttgac
ggcaacgtcaccaccttgacggatcttcacaatcctcacaacctcacctgctggcaggcg
caagggggtcaggacagcggggactgggtgctcaccgtgcccctgggtcggcgctttgaa
atcacctacataagtctgcagttctgctatcatggagaaccgtccgacccgatctcaatc
tccatcttcaaatccatggattacagacacacttggagggcgatgcaacattactccagc
gattgcctcggggattttgggctcccctcccagacggtggcccagaccagacaccaggaa
acggaaccgctgtgctccgatcctcggcccttgcagaggcagcggggcggtatggtgctg
gcgttctcggccctcgacggccgcccgtcgtctccagattttgactacagtcccactttg
caagattgggtgaccgccacagacatccgtgtggtctttcatcaaacatccgccggcaca
aaactgagttcgggagtgaagaacgatgggaggactgaggagggtcgagttgtcgatctc
ctgaggtggagttcgggcgctgccggtgatccgattggcaacgtgccttcctttaataac
agggccacaacaaactctgaaatgagcacgcagaagaaagcaggcaagcttcgagggaga
agtcatcacaaggtaggaaacaacgtgaccagtaaggaaagtggggacacttacagctcg
gaggttgagagcgctagaaagcttggtcgtaagaaagacggcgaggagtggctcctttgt
ccaaacggtgactgtaactggacaggacgccaaagagcggccaagggacgagaactgaga
aagcgaagaaacaaccatcccaacatcccgcaaacctccaggaaccttcaggcggcgctg
gcggcatcacaagctccgcctaccgtaccctccctacctcctctggccctctctgacctg
caggtaggggggcggtgcaaatgcaacggacacgcttccaagtgtcgacgtgacgacgcg
gggcgggccgtgtgcgtatgcaagcatcacacggccggcccggattgcgacgtgtgcgag
gacttctactttgacagaccctggcatcgagccacgcccacccacccaaacccttgtgtg
gcgtgcgagtgcaacggccactccagcaagtgccgcttcagcatggaggtgttccagcaa
tccggacgacgtagcggcggcgtgtgcctcaagtgtcgccaccacacggccggacgccac
tgccagtactgccacaacggctacacccgggaccaaagcaagccgctgcaccaccgcaaa
gcctgccaaccttgtcagtgccatcctctgggagcggtgggccgctcgtgtaacaacacg
tcgggtcagtgcctttgccgacaaggagtgaccgggctcaggtgcaaccgctgcgcccct
ggatacaaacagggcacgtcgcctctgcgcccttgcgtccggattcaggagattactcca
actccagtttttcaacctcaatacggcatcgatgaggagtgtgtgtcccactgccaacct
tctcagggcaaagtcaggatgaacttggacacgtactgcctcaaggactacgtgttgaag
gttcaggtgagagggatggagcgttcaggtccctggtggcagttttccatttcggtccaa
gtggtcttccgtacgggatccgccacgcgaatccgcaggggcccccagtccctttgggtg
cctgaccgggacctgacctgcggctgccccgctctccacgtgggccggacctttttgctg
atcggggccgacgaaggcgagagggatcgggcgccggacgagaggaggttggtggccgac
cgctccacgttggccctccagtggcgggaacactggagccccaagctgaggggctttcgc
gggcaggacaagaagggccgctgtgccgatcgaccccccaaccaggacaggaatccgtca
gaaccgcagacaggatacatcccccctcacctgcttgccgacacagacaacggaagctca
tccggcgaggtctcgaccttgtcgccacaacacagtcactcgtga
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