Syngnathus scovelli (Gulf pipefish): 125990107
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Entry
125990107 CDS
T08785
Symbol
abca1b
Name
(RefSeq) phospholipid-transporting ATPase ABCA1b
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv02010
ABC transporters
sscv04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
125990107 (abca1b)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
125990107 (abca1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
sscv02000
]
125990107 (abca1b)
Transporters [BR:
sscv02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
125990107 (abca1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
AAA_23
Motif
Other DBs
NCBI-GeneID:
125990107
NCBI-ProteinID:
XP_049612801
LinkDB
All DBs
Position
1:28225959..28242223
Genome browser
AA seq
2292 aa
AA seq
DB search
MSQWSQLALLLWKNLTYRRRQKLQLLVEIVWPLLIFFILIGVRLSYPPYEQHQCHFPNKA
MPSAGTLPWIQGILCNANNPCFRGPTPGESPGVVGNFNDSIISRLFSDAKKILLYSQNDK
NLEGFKELARALQKLQSSRTGFKLKHFLRDDETLSSFLLRNVSFSPPMVANILEADVDLE
KVLLKGFGVHLRDACPYRPGGRSVHEFINITDPQAAMMVQAVVCAAPTVWLDHAERNFLD
NVDFLKPILRDVRSDPEAIQDVSVATNKLLDSLSSLAVELAGMKSWMDLRKEIIFLTRNA
TSSPSAMYQAVSRIVCGHPEGGGLQIKSLNWYEDSNYKALFGNHNSSEDDAAQHYDNSST
PFCNSLVRDMDSNPMSRMIWEAVKPLLMGKILYTPDTPATRRVIHEVNRTFQELGVFRDL
EGMWKEMRPKVWNFLENSEQINLIRSLLKNNVTARYFHAHLADTDWTVADVSNFLSRHAD
QRRATSGAITWRDVFNETDQAVTGISRFMECVNLDKLEPVPTEEHMINESMVLLEDRKFW
AGIVFPDVGANATELPPNISYKIRMDIDNVERTNKIKDAYWDPGPRADPFEDMRYIWGGF
SYLQDVIEQALVRTMTGTKEKMGVYIQQMPYPCYVDDIFLRVMSRSMPLFMTLAWMFSVS
IILKSVVYEKEARLKETMRIMGLDNGILWFSWFISSLIPLLISAGLLVLMLKKGNLLPYS
DTGVVFLFLASFAVVTIMQCFLISTAFARANLAAACGGIIYFTLYLPYVLCVAWQDHIGF
AAKVFASLLSPVAFGFGCEYFALFEEQGVGIQWKNLVASPLEEDDFSLRTAIIIMYFDSF
LYGLLTWYIEAVFPGQYGIPRPWYFPFTKSYWLGDQDKSNKIPLNHKGNPGAVCMEEEPA
HLEPGVYIENLVKVYRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPT
SGTAYILGRDIRTDLSAIRQSLGVCPQHNVLFSMLTVEEHIWFYARLKGLSEEQVKGEIE
QILHDTGLPHKRKSKTSTLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDL
LLKYRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLYLKNQLGTGYYLTLVKKD
PEPSLNSYRNSSSTVSLTKKDENGSVSSSDAGLGSEQESEATTIENGQAASVCDAPLPPV
DTSQVTGLILRHIPAARMVEDLGHELTFVLPYSAAKDGAFVELFREMDDKLSDLNISSYG
VSDTTLEEIFLKVAEDNGVDTDVPSDGTLPVRRRRRTHAFGGGDPQSCLRPLTDERDNED
GSDSDFESRETDRLNCVGGKGSAKAGGWNLRKQQFVALMWKRFLYARRSRKGFFAQIVLP
AVFVCIALVFSLIVPPFGKYPSLELQPWMYEDQVTFFSDDAPGDATMQKLLASLLDPPGL
GTRCMLGHPVPEAPCTMGDDDWSVPEVPDSVTQLFSSGNWTMQDPSPACSCSCDGKKKML
PDCPAGAGGMPPPEMKLSSTDTLQNLTGRNISDYLVKTYAQIIGKSLKNKVWVNEFRYGG
FSLGARSTQVLPPAGEVDDAIERIRKVFELTEGGAADRFLDNLSGFINGLDTKNNVKIWF
NNKGWHSMGSFINVMSNAILRANLPPGEDASSFGIRAFNHPLNLTKEQLSQVALVTTSVD
VLVSICVIFAMSFVPASFVVFLIQERVSKAKHMHFISGVHPLLYWTTNFIWDMCNYIVPA
TLVVLIFVCFQQKAYVSSTNLPVLALLLLLYGWSITPLMYPASFLFSIPSTAYVVLTSVN
ILIGINGSISTFVMELFGDHEIGGINDILKNVLLIFPHFCLGRGLIDMVKNQAMADALQR
FGENRLRSPLEWDMVGKNLFAMAVEGVVFFIITVLIQYRFCVKPRPVSHMTKLGVLGEED
EDVARERQRIVHGLGQGHILELRQLTKVFKRKQKPAVDRLCVGIPPGECFGLLGVNGAGK
TTTFKMLTGDTMVTSGEAFLAGKSILRELDQVHQNMGYCPQFDAINELLTGREHLELYAI
LRGVPGKEVCDVAEWGIRRLGLLKYADKAAGSYSGGNLRKLSTAMALIGAPPVVFLDEPT
TGMDPKARRALWNCILGVIKEGRSVVLTSHSMEECEALCTRMAIMVNGRFKCLGSVQHLK
NRFGDGYTIILRVAGPDPDLVPVMKFIESELSGSTLKEKHRNMLQYQLPSSRCSLTHIFF
TLANNKHTLKIEDYSVTQTTLDQVFVNFAKDQSDDYHLKDAPSSSSSTKRRRGGNAVRVD
LSHADPSKESIM
NT seq
6879 nt
NT seq
+upstream
nt +downstream
nt
atgtcccagtggtcgcagctggccttgctgctctggaagaacttgacgtaccgtcgtagg
cagaagcttcagctgctggttgagatcgtttggccgctgctcatcttcttcatcctgatc
ggagtacgcctcagctacccgccgtacgagcaacaccaatgtcacttccccaacaaggcc
atgccgtcggcgggcaccttgccgtggattcagggcatcctctgcaacgccaacaacccg
tgcttccgcggacccacgccgggcgagtcgccgggcgtcgtcggcaacttcaacgactcc
ataatctctcgtctgttctccgacgccaagaagatccttctgtacagtcagaatgacaaa
aacttggagggcttcaaggagctcgcgcgagccctccaaaagcttcagagcagcagaaca
ggtttcaagttaaaacacttcctgcgagacgatgagactttgtccagcttcctgttgagg
aacgtgtccttctctccgcctatggtggctaacatcctggaggctgatgtcgacctggag
aaggtcctcctgaaaggcttcggcgtccacctgcgtgacgcctgtccttacagaccaggc
ggtcgcagcgtgcacgagtttatcaacatcacggacccccaagccgccatgatggtgcag
gcagtggtgtgcgctgccccgaccgtgtggcttgaccacgccgagcgcaacttcttggac
aacgtggacttcctcaaacctatcctgagggatgtcagatcagaccctgaagccattcag
gatgtttccgtggcaaccaataagctgctggacagtctcagctccctggctgtggagttg
gccggcatgaagagctggatggatctgaggaaagagatcatcttcctgacgcgcaacgcc
acgtcctcgcccagtgccatgtaccaagccgtgtcgcgcatcgtctgcggccatcccgag
ggcggcggcttgcagatcaaatccctcaactggtacgaggacagcaactacaaggcgctc
ttcgggaaccacaacagcagcgaggacgacgccgcgcagcactacgacaactcctccact
cctttctgcaacagtctggtgagggacatggattccaatcccatgtccagaatgatctgg
gaggccgtgaagccgctgctgatggggaagattctctacactcccgacacgcccgccact
cgccgggtcatccacgaggtgaaccggacatttcaggagctgggcgtgttcagggacttg
gaaggaatgtggaaagagatgagacccaaagtttggaacttcctggagaacagtgaacag
attaacctgatccggtccctgctgaaaaacaacgtgaccgccagatacttccacgctcac
ttggccgacaccgactggacggtggccgacgtctccaacttcctgtccaggcacgccgac
cagcggcgagccacgagcggcgccattacctggagggacgtcttcaatgagacggaccag
gccgtcactgggatctctcgcttcatggagtgtgtgaatctggacaaactggagcccgtc
cccactgaggagcacatgatcaacgagtccatggttctgctggaggacaggaagttctgg
gccgggatcgtcttcccagacgttggcgccaatgccactgagcttccccccaacatcagc
tacaaaatccgcatggacatcgacaatgtggagcggaccaataagatcaaagacgcgtac
tgggacccaggtcctcgtgctgacccctttgaggacatgcgctatatttggggagggttc
tcctacctgcaagatgtcattgagcaggccctggtccgaaccatgacgggcaccaaggag
aaaatgggcgtctacatccagcagatgccctacccgtgctacgtggatgacatcttcctc
cgtgtgatgagccgctccatgccgctcttcatgacgctggcctggatgttctccgtctcc
atcatcctgaagagcgtggtgtacgagaaggaggcgcgtctgaaggagaccatgaggatc
atgggattggacaatggcatcctgtggttcagttggttcatcagcagcctgattccgctg
ctcatcagcgccggactgctggttctgatgctcaagaaaggaaacttgctgccatacagc
gacaccggtgtggtcttcctcttcctggcctcctttgccgtggtgaccatcatgcagtgc
tttctcatcagtacggcatttgctcgagccaatttggccgcagcctgcggaggaatcatc
tacttcacgctgtacttgccttacgtactttgcgtggcctggcaggaccacatcggcttt
gccgccaaagtctttgcgagtctcctgtcccccgtggccttcgggtttggctgcgagtac
tttgctctgtttgaagagcagggcgtcggcatccaatggaagaacctggtggcgagtccc
ctggaggaagacgacttcagcctgcgcactgccatcatcatcatgtactttgactccttc
ctgtacggactcctgacctggtacatcgaagccgtctttccaggccaatacggcattcct
cggccgtggtacttccccttcaccaagtcctactggcttggagaccaggacaagtccaac
aaaatccctctgaaccacaaaggcaaccctggtgctgtgtgcatggaagaggaacccgct
catcttgagcccggcgtctacatcgagaatctggtcaaagtctaccggcacgggaagaag
ctggcggtggacggactgactctgggtttttatgagggacagatcacctccttcttggga
cacaatggtgccgggaagactaccaccatgtccatcctaaccggtctgttcccacccacc
tccggtaccgcctacattctgggccgagacatccgcacagacctgagcgccatccggcaa
agtctgggcgtctgccctcaacacaacgtgctcttcagcatgttgacggtggaagagcac
atctggttctacgctcgactcaaaggcctgtcggaggagcaggtgaaaggcgagatcgag
cagatcctccacgacacgggcctgccgcacaagcgcaaatccaagaccagcacgctctct
ggcggcatgcagaggaagctatctgtcgctttggcctttgtcgggggttcaaaggtcgtc
atcttggatgagcccacggctggagtcgatccttacgctcgaagaggcatctgggatctg
ctgctgaaataccgccagggtcgcaccatcatcctgtccacgcaccacatggacgaggcc
gacatcctgggcgaccgcatcgccatcatctcgcacgggaaattatgctgcgttggctcg
tcgctctacctcaaaaaccagctggggacgggctactacctgaccctggtcaagaaagac
cccgaaccctcgctcaactcttacaggaactcatccagcaccgtctccctcaccaagaag
gacgagaacggttccgtcagcagcagtgacgccggactgggcagcgagcaggagagtgag
gccaccaccattgaaaacggtcaggcagcgtcggtctgcgatgcgccgctccccccggtt
gacacctcccaggtgaccggactgatcctgcgccacatccccgccgcccgcatggtggag
gacctcgggcacgagctgaccttcgtcctgccttactcggccgccaaggacggagccttc
gtggagcttttccgagaaatggacgacaagctgagcgacttgaacatctctagttacggc
gtgtccgacaccaccttggaggagattttcctgaaagtggccgaagataacggcgtggac
acggacgtgccctcagatggaacgctccccgtccggcgacgacggcggactcacgccttc
ggaggaggcgaccctcagagctgcctgaggcctctgacggacgagcgcgacaacgaagac
gggtccgacagcgatttcgagagtcgggaaacggacaggttgaattgtgtcggtgggaaa
ggatcggccaaagcgggcggctggaatctgaggaaacaacagtttgtggcgctcatgtgg
aagagattcctttacgcccggcgttcccgcaaaggattcttcgctcagatcgtcctcccc
gccgtctttgtctgcatcgcgctcgtcttcagtctcatcgtccctccttttgggaaatat
cccagtttggaactgcagccctggatgtacgaagaccaggtcactttcttcagtgacgac
gcgccgggagacgccaccatgcagaagttgctggcttcccttttggatccgccgggactg
gggacgcgttgcatgttgggacatcctgttccagaggcgccgtgcacgatgggggacgac
gactggagtgttccagaagtccccgacagcgtcacgcagctgttctcttccggaaactgg
accatgcaagacccgtccccggcctgttcctgcagctgcgacggcaagaagaaaatgttg
cccgattgccccgccggcgccggagggatgcccccgcccgagatgaagttgagttccacc
gacacactgcagaacctgacggggcggaacatctccgactatctggtcaaaacgtacgcg
cagatcatcggcaagagtttgaagaacaaagtttgggtcaacgagttcaggtacggaggc
ttctcgttgggtgccaggagcactcaggtcctcccgccggccggcgaggtagacgacgcc
atcgagcgcatccgcaaagtctttgaactcaccgagggaggcgcagctgatcgctttctt
gacaatttgtcgggcttcatcaacggtttggacaccaaaaataacgtcaagatctggttc
aacaacaaaggctggcacagcatgggctccttcatcaacgtgatgagcaacgccatcctg
agggccaacctccctcccggcgaagacgccagcagcttcggaatccgagccttcaaccat
ccgcttaatttgaccaaggagcagctgtcccaggtggcgctggtcacgacctcagtggac
gtgctggtgtccatctgcgtgatctttgccatgtccttcgtcccggccagctttgtggtc
ttcctcattcaggagcgcgtgagtaaggcgaagcacatgcacttcatcagcggcgtccac
ccactcctctactggaccaccaacttcatctgggacatgtgcaactacatcgtcccggca
acgctggtcgttctcatcttcgtgtgtttccaacaaaaagcttacgtctcctccacaaac
ctgcccgtgcttgctctgcttcttctgctctacgggtggtccatcacgccgctgatgtac
ccggcgtcgttcctcttcagcatccccagcacggcctacgtggtcctcaccagcgtcaac
atcctcatcggcatcaacggcagcatctccaccttcgtcatggagctctttggggatcat
gagattggaggcatcaacgacatcctgaagaacgtcctgctcatcttccctcacttctgt
ttggggcgaggcctcatcgacatggtgaaaaaccaggccatggccgacgcgctgcagaga
ttcggagagaacaggttgcgttcacctctggaatgggacatggtgggaaagaatttgttc
gccatggcggtggagggcgtcgtcttcttcatcatcaccgtcctcatacaatacagattc
tgtgtcaaacccaggccagtaagtcacatgaccaaactgggagttctgggagaggaggac
gaagacgttgctcgggagagacagcgcatcgtacatggactcggacaaggacacatcctg
gagctccgacaactcaccaaggtgttcaaaaggaaacagaagccggcagtcgatcgactt
tgtgttggaattcctcccggcgagtgcttcggtctgctgggcgtgaatggagccggaaag
acaacgaccttcaaaatgctgacgggcgacaccatggtaaccagcggggaggccttcctg
gctggaaagagcatcctgcgggagctggatcaggtccaccagaacatgggctactgcccc
cagtttgatgccatcaacgaactgctgacaggaagagaacatctggagctgtacgccatc
ctcagaggggttcctggcaaggaagtctgcgacgtggccgagtggggcatcaggaggttg
ggcctgctcaagtacgccgacaaagccgcaggaagttacagcggtggcaatttgcgcaaa
ctttctaccgccatggcgctcatcggcgcaccgcccgtcgtcttcctggacgagccgacc
acggggatggaccccaaagctcgacgagccctctggaactgcatcctcggcgtcatcaag
gagggacgctccgtggtgctcacctcgcacagcatggaggagtgtgaagcattgtgcacc
cgcatggccatcatggtgaacggcaggttcaaatgtctcggcagcgtgcaacatttgaag
aacaggttcggcgacggctacaccatcatcctgcgcgtggcggggcccgaccccgatctc
gttcccgtcatgaagttcatcgagagcgagctgagcggaagcacgctgaaggagaaacac
cgaaacatgctccaataccagctgccgtcgtcacgatgctcgctcacgcacatcttcttc
accctcgccaacaacaaacacacgctcaagattgaagactactccgtcacgcagactaca
ctcgaccaggtgtttgtgaacttcgctaaggaccaaagcgacgactatcacttgaaagac
gctccctcgtcctcttcctcaacgaagcggcgccggggaggaaacgcagttcgcgtggac
ctttctcatgcggaccccagcaaagagagcatcatgtga
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integrated database retrieval system
