Syngnathus scovelli (Gulf pipefish): 125990127
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Entry
125990127 CDS
T08785
Symbol
polr2b
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03020
RNA polymerase
sscv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
125990127 (polr2b)
09124 Replication and repair
03420 Nucleotide excision repair
125990127 (polr2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sscv03021
]
125990127 (polr2b)
03400 DNA repair and recombination proteins [BR:
sscv03400
]
125990127 (polr2b)
Enzymes [BR:
sscv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
125990127 (polr2b)
Transcription machinery [BR:
sscv03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
125990127 (polr2b)
DNA repair and recombination proteins [BR:
sscv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
125990127 (polr2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
125990127
NCBI-ProteinID:
XP_049612848
LinkDB
All DBs
Position
1:28242839..28249199
Genome browser
AA seq
1174 aa
AA seq
DB search
MYDQDEDNQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHTSGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTIIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAFTGECRSCLENSSRPTSTIWVSMM
ARGGQGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKERRIKYAKEVLQKEMLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLS
HLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGM
RHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPDNDDELDSTNRRYTKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVNVQKVSNLLSEYGY
HLRGNEVLYNGFTGRKLTSQIFIGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSR
DGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGLMAIANTRTHTYECRGC
RNKTQISLVRMPYACKLLFQELMSMSIAPRMMTA
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtacgaccaggacgaagataaccagtatgatgaggacgacgacgaaatcacgccggat
ctgtggcaggaagcctgctggatcgtcatcagctcctatttcgacgagaagggtttggtt
cggcagcagctggattcttttgacgagttcatccagatgtcggtccagaggatcgtggaa
gacgcgccacccatcgaccttcaggccgaagcccagcacacctccggagaggtggaggag
cctccgcgttacctgctgaagtttgagcagatctacttgtccaagcccacccactgggag
cgagacggcgccccttcccccatgatgccaaacgaggcccgactgcgaaacctcacatac
tcggcccctctgtacgtggacatcaccaagaccatcatcaaggagggcgaggatcagctt
cagacgcagcaccagaagaccttcatcgggaagattcccatcatgctgcgttccacctac
tgcttgctcagcggcctgactgatcgtgacctgtgcgagctcaacgaatgcccgctggac
cccggcggctacttcatcatcaacggctccgaaaaggtgctgatcgcccaggagaagatg
gccaccaacacggtgtacgtgttcgccaagaaggactccaagtacgccttcacgggcgag
tgccgctcctgcttggagaactcctcgcgtcccaccagcaccatctgggtcagcatgatg
gcgcgaggaggacagggcgtaaagaagagcgccatcggccagaggatcgtgtccacgcta
ccgtacattcgccaggaagtccccatcatcatcgtgttccgagcgctgggcttcgtctcg
gaccgtgacatcctggagcacatcatctacgactttgacgaccccgagatgatggagatg
gtcaagccatcgctggacgaagcctttgtcatccaagagcaaaacgtggccttgaacttt
atcgggtccaggggagccaaaccgggggtcaccaaagagcgcaggatcaagtatgccaag
gaagtcctgcagaaggaaatgctgccgcacgtcggcgtcagcgacttctgcgaaaccaag
aaggcttacttcctcgggtacatggtccacaggctactgctcgctgctctgggcagacga
gagctggacgacagagatcactacggcaacaagaggctggacctggccgggcccctcctg
gccttcctcttccgagggatgtttaagaacctgctgaaggagatccgcatctacgcacag
aagttcatcgacagaggcaaagacttcaacctggaactggccatcaagaccaggatcatc
tcggacggactcaagtactcgctggctaccggcaactggggcgacgtcaagaaggcccac
caagcccgggccggcgtgtcccaggtgctgaaccgtctcaccttcgcctccaccctgtct
cacctgcgccgcgtcaactcccccatcgggcgcgatggcaaactggccaagcccagacag
ctgcacaacacgctgtgggggatggtgtgccccgccgagacccccgagggtcacgctgtg
ggcctggtcaagaacctggccctgatggcttacatctcggtgggatcgcaaccttctccc
atcctggagttcttagaggagtggagcatggagaacctggaagagatctcacctgccgcc
attgctgatgccaccaagatcttcgtgaacggatgctgggtcggaatccacaaggatccg
gagcagctgatgaacacgctgcggaagcttcggcgccagatggacatcattgtgtccgag
gtgtccatgatccgagacatccgagagcgcgagatccggatctacacggacgccgggcgc
atctgcagaccgcttctgattgtcgagaagcagaaactcttgctcaagagacgccacatt
gaccagctcaaggagagagagtacaacaactacagctggcaggatttggtggcaagcggc
gtggtggagtacattgacacgctagaggaggagacggtgatgctggccatgacccccgat
gaccttcaagagaaaggcgttgcctactgctccacctacacccactgtgagatccaccct
tccatgatcctgggggtgtgcgcctccatcatccccttccctgatcacaaccagtccccc
aggaacacgtaccagtcggctatgggcaagcaggccatgggcgtctacatcaccaacttt
cacgttcgcatggacacgctggcgcacgtcctgtactaccctcagaagccgctggtcacc
acacgctccatggagtacctgcgcttcagagagctgccggcaggcatcaactccatcgtg
gccatcgcctcatacacgggttacaaccaggaggactcggtcatcatgaatcgctcagct
gtggaccgaggcttcttcaggtccgtcttttatcgctcctacaaggagcaggagtccaag
aagggcttcgaccaggaggaggtcttcgagaagcccaccagggagacctgccaggggatg
cgccacgccatctacgacaaactggacgacgacgggctgatcgccccgggcgtgcgcgtg
tcgggcgaggatgtgatcatcggcaagacggtgacgctgcccgataacgacgacgagctg
gatagcaccaaccgacgctacaccaagcgcgactgcagcaccttcctccgcaccagcgag
accggcatcgtggaccaggtcatggtcacgctcaaccaggaaggctacaagttctgcaaa
atacgggtccgttcggtgaggatccctcaaattggagacaagtttgccagcaggcacgga
cagaaaggaacctgcggaatccagtaccggcaggaggacatgccgttcacatgtgagggc
atcacccctgacatcatcatcaacccacacgccatcccgtccagaatgactgtcggccat
cttatcgagtgcctgcagggcaaggtttcggccaacaaaggcgagatcggcgacgccacg
cccttcaacgacgccgtcaacgtgcagaaggtctccaacctgctctcggagtacggctac
cacctgaggggaaatgaggttctgtacaacggcttcacgggccgcaagctgacgtcgcag
atcttcatcgggccaacgtactaccagcggctcaagcacatggtggacgacaagatccac
tccagggctcgcggacccgtgcagatcctcaacaggcagcccatggagggccgatcgcgt
gacggcggccttcgttttggcgagatggagcgtgactgccagatcgctcacggcgccgct
cagttccttcgcgagcgtctcttcgaggcgtccgatccctaccaggtgcacgtgtgcaac
ctgtgcggactcatggccatcgccaacacacgcactcacacgtacgagtgtcgtggctgc
cgcaacaagacgcagatctcgttggtgcgtatgccgtacgcgtgcaagcttctcttccag
gagttgatgtcaatgagcatcgctccccggatgatgacggcgtag
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integrated database retrieval system
