Syngnathus scovelli (Gulf pipefish): 125990206
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Entry
125990206 CDS
T08785
Symbol
esr1
Name
(RefSeq) estrogen receptor
KO
K08550
estrogen receptor alpha
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04081
Hormone signaling
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04081 Hormone signaling
125990206 (esr1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sscv03000
]
125990206 (esr1)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
sscv03310
]
125990206 (esr1)
Transcription factors [BR:
sscv03000
]
Eukaryotic type
Zinc finger
Cys4 estrogen receptor-like
125990206 (esr1)
Nuclear receptors [BR:
sscv03310
]
3. Estrogen like
3A. Estrogen receptor
125990206 (esr1)
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SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Oest_recep
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
125990206
NCBI-ProteinID:
XP_049613057
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Position
20:complement(5318499..5326932)
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AA seq
632 aa
AA seq
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MSVSRRDEGKEPGGAADACRLKRQSPAKSRKPCRPLPGPSIRPAAPELENLSPPRLSPPP
RAPLNGMYPEESRGSGGVATVDFLEGTYDYASPAQTPLYSHPVPGYYSAPLETHGSPSEG
SLQSLGSGPTSPLVFVPTSPRLSPFMHPPGQHYLETTSTPIYRSSETISQQQASRDEQCS
TSDEAYVLGGSEAAAAIGVFEMAKETRFCAVCSDYASGYHYGVWSCEGCKAFFKRSIQGH
NDYVCPATNQCTIDRNRRKSCQACRLRKCYEVGMMKGGVRKDRGRITRRDKRRTGSIEKS
TKEAEHRKAPLQDGRKQSGGGSVSGGRSSVTDIPPDQVLLLLQGAEPPILCSRQKLNRPY
TEVTMMTLLTSMADKELVHMIAWAKKLPGFLQLSLHDQVQLLESSWLEVLMIGLVWRSVH
CPGKLIFAQDLILDRNEGDCVEGMAEIFDMLLATASRFRMLRLKPEEFVCLKAIILLNSG
AFAFCTGTMEPLHNGAAVQDMLDTITDALIHHISQSGCSVQQQARRQAQLLLLLSHIRHM
SNKGMEHLYSMKCKNKVPLYDLLLEMLDAHRLHRPVRATQIWSQPERMPPSGSNGAASGS
GGRGAHESLSRGPPCPGVLQFGGSRPDCTEIL
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtgagtcgaagggatgaaggaaaagagcctggcggcgcagcggacgcttgtcgt
ttaaagaggcagagcccggcaaagagcaggaagccttgcagaccactgccgggacccagc
atccgcccggccgccccagagctggagaacctgtccccgccgcgcctgtcgcccccgcct
cgcgcccctctcaacggcatgtaccccgaagagagccgggggtccggtggggtggccaca
gtggacttcttggaggggacgtacgactacgcctctccggcccagacgccgctttacagc
caccctgtgccaggctattactctgcgcccctggagacccacggttcgccctcagagggc
agcctccaatcactgggcagcgggcctaccagccccctcgtgtttgtgcccaccagcccc
cgactcagcccattcatgcacccccccggccagcactatctggaaaccacttcaacaccc
atctacaggtctagtgagacgatcagtcagcagcaggcgtctagggacgagcagtgcagc
actagtgacgaggcgtacgtcttggggggctcggaggccgccgcggccatcggggtcttc
gagatggccaaggagacgcgcttctgtgccgtgtgcagcgactacgcctcgggctaccac
tacggggtgtggtcctgtgagggatgcaaggccttctttaagaggagcattcaaggtcac
aatgactacgtgtgcccagcaaccaatcagtgtactattgacaggaatcgcaggaagagc
tgccaagcgtgccgacttaggaagtgttatgaagtgggcatgatgaaaggaggggtgcgc
aaagaccgcggtcgcataacacgccgtgacaagcggcggaccggcagcattgagaagtcg
accaaggaggccgagcatagaaaagcgccccttcaggacgggaggaaacagagcggcggc
ggaagtgtcagtgggggaaggtcgtcagtcacggacatccctcctgaccaggtgcttctc
ctgctgcagggggccgaaccccccatattatgttcccgacagaagctgaaccgaccctac
acagaggtcaccatgatgacgttgctcaccagcatggctgacaaggagctagtccacatg
atcgcctgggccaagaagctgccaggcttcctccagctgtccctgcacgaccaggtgcag
ctgctggagagctcgtggctggaggtgctgatgatcggccttgtctggaggtctgtccac
tgtccgggcaagctcatcttcgctcaggacctcattctggacaggaatgaaggcgactgc
gtggaaggtatggcagagatcttcgacatgctgctggccaccgcctctcgcttccgtatg
ctaagactcaagcccgaggagtttgtctgcctcaaagcaatcatcttgctcaactctggt
gcctttgcgttctgcacgggcaccatggagccgctccacaacggtgcggcagtgcaggac
atgctggacaccatcacggacgccctcattcatcacatcagccaatcaggatgctcggtg
cagcagcaggcgaggcgccaggcacagctgctgctcctcctctctcacatcagacacatg
agtaacaaaggcatggagcacctgtacagcatgaagtgcaagaacaaggtgccactctac
gacctgctgctagagatgttggatgctcaccgcctgcaccgtcccgtcagagccacgcag
atctggtctcagcctgagagaatgcctcctagcggcagtaacggtgccgcctccggttca
ggaggtcgcggcgcacacgagagtctgagcagagggccgccgtgtccaggcgtgctgcag
tttggaggctcccgccccgactgtacagaaattctgtga
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