Syngnathus scovelli (Gulf pipefish): 125990244
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Entry
125990244 CDS
T08785
Symbol
hnrnpub
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein Ub
KO
K12888
heterogeneous nuclear ribonucleoprotein U
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125990244 (hnrnpub)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sscv03041
]
125990244 (hnrnpub)
Spliceosome [BR:
sscv03041
]
Common components
Common spliceosomal components
hnRNP proteins
125990244 (hnrnpub)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_33
SAP
AAA_22
CPT
SAP_new25
AAA_17
6PF2K
Motif
Other DBs
NCBI-GeneID:
125990244
NCBI-ProteinID:
XP_049613112
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All DBs
Position
20:7599210..7606516
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AA seq
825 aa
AA seq
DB search
MSSINVKKLKVNELKDELKKRHLSDKGLKAELMDRLQAALDEEAAAYEEEAAEDEELEQA
AEPECMGEDEEGEGEGPVVESMEANEQEAEVEQNGANDDDGGVAAVEASAVAEPSTVAAA
ASSAEDEEMGDGEEDDEMDPMLKADVDDMEKIDEDDGEPEEQAAEGDADKDTNADQKNKK
GVKRRREEHGRGYFEFIEENKYSWASFKSPVPPLEEEDEEFDDTKVCLDNYNCDLHFKVS
RDRFSASSLTMESFAYLWSGGKATHGVNKGKVCFEVKITEKIPVKHISSKNMEIHDVQVG
WSSTASSLLLGDGSLSFAYSGKGKKIVNGVMEDFGETFDENDVICCLADFEGDEAVLSYS
KNGGEPAEAFRVSKDELNDQPLFPHVMCHNCAVEFNFGQMETPYFPAPSEYTFMQDVPVD
DRVRGPCGPQTKADCEIIVMVGLPGAGKTTWVKNHVQENPGKYYILGSDTIVEKMMINTP
NRQPKEYNKLLAISQRAPLFLGKFIEIAARKKRNYILDHTNLSAPGQKRKMCLFAGFQRK
AVVVFPSDDDYKQRVQKKVMIDGKEVPEHALLKMKGFYSLPVEGESFNEVLFAELPRDDA
AKVLETYKEESKSALPAEKKPNQGSSTPKRGGGSRGGGRGGKNQFGRNNGPAQRGGGGNR
QGFQNRGNYRGAPNPRGGFARPPRGYMPPPAYRGGYPSRGSYNRSGNHMPSMGGSPRGGP
MRGNMGPRGGGHMNRGGPMNRGNMSRGGGGGGGMSRGGNRGHHNQFQQRGGGRGNFGNKN
SNFNRNSGGFGNRNGMDKAQAFNQSWQQGFWNQKPWNQQYQHNYY
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
atgagttcaatcaacgtcaaaaagctaaaagtaaacgaactgaaggacgagctgaaaaag
cgtcatctctccgacaagggactgaaggctgagttgatggaccgcctgcaggccgccttg
gatgaggaggccgcggcctacgaagaagaggctgcagaggatgaggagttagaacaggcc
gccgaaccagaatgcatgggggaagacgaagagggcgagggagagggtccggtagtagaa
agcatggaggctaacgagcaggaagccgaggtagaacagaatggcgcaaacgacgacgat
ggtggtgtcgctgcggtggaggcttctgctgtcgcggagccttctaccgtcgccgctgct
gcttcttctgccgaggacgaagagatgggagacggggaagaggacgacgagatggatccc
atgctcaaagcagacgtggacgacatggagaaaatagatgaagacgacggtgagcctgag
gaacaggcagctgagggggatgcggacaaagacacgaatgctgatcagaagaataagaag
ggtgttaagagacgccgggaggaacatggaaggggctactttgaatttattgaagagaac
aaatacagctgggcctcatttaagtcgcccgtgccccctttggaggaagaggatgaagag
tttgatgacaccaaagtctgcctggacaactacaactgcgacctgcattttaaggtgtca
cgagaccgcttcagtgcctcgtcgctcacaatggaaagttttgcttacctctggtctggg
ggcaaggccactcatggtgtaaacaaaggcaaagtctgctttgaagtgaagatcacagaa
aagattccagtgaaacacatttccagtaagaacatggaaatccatgatgtgcaagttggc
tggtcgtcgactgcttcatcactgctactcggtgacggcagtctttcatttgcgtactct
gggaaggggaagaaaattgtaaatggtgtgatggaggactttggggaaacctttgatgag
aacgatgtcatctgctgtcttgctgattttgaaggagacgaggcggtactgtcctactct
aagaacggcggggagccagccgaagccttccgtgtgagcaaagacgagctgaacgaccag
cctcttttccctcatgtcatgtgccacaattgcgccgtggagttcaacttcggccagatg
gagaccccgtacttccccgctccctccgagtacaccttcatgcaggacgttcccgtcgac
gaccgcgtccgcgggccttgcgggccgcagaccaaggccgactgtgagatcattgtgatg
gtgggcctgccgggtgcgggcaagaccacatgggtgaagaaccatgtccaggagaaccct
gggaagtattacatcctgggaagtgataccatcgtggaaaagatgatgatcaacaccccg
aatcggcaacccaaagaatacaacaaactgcttgccatttcccagcgtgctcctcttttc
ctgggaaagttcatcgagattgccgcgcgcaagaaaaggaactacatcctggatcatacc
aacttgtccgcccctggccagaagaggaagatgtgtttgtttgccggcttccagcgcaaa
gcggtggtggtattcccctccgatgatgactataagcagagagttcagaagaaggtcatg
attgatggcaaagaagtgcctgaacatgctcttctcaaaatgaaaggcttctattctctg
cctgtggagggcgagagcttcaacgaggtgctctttgctgagctgccgagggacgacgcc
gccaaagttctggaaacgtacaaagaagaaagcaagagcgctctgcctgctgaaaaaaag
cccaaccagggaagctccacacccaagcgaggcggtgggtcccgcgggggcggtcgtgga
ggcaagaaccagtttggccgcaacaatgggcccgcacaaagaggcggcggaggcaatcgt
cagggcttccagaatcggggcaactatagaggagccccgaacccccgcggtgggttcgcc
cgcccccctcgtggctacatgccacccccggcttacagaggcggctaccccagccgcggc
agctacaaccgcagcggcaatcacatgcccagcatgggcggctcacccagaggcggacca
atgaggggcaacatgggccccagaggaggtggacacatgaatagaggcggtccgatgaac
agagggaacatgagcagaggaggtggcggcggcggcggaatgagtcgcggcggaaataga
ggacatcacaaccagtttcagcaaagaggcggcggccgcggcaactttggcaacaagaac
agcaatttcaacaggaatagcggcggttttggcaacaggaacggcatggacaaggcccag
gccttcaaccaaagctggcaacaagggttctggaatcagaagccatggaaccagcagtat
cagcacaactattactga
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