Syngnathus scovelli (Gulf pipefish): 125990259
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Entry
125990259 CDS
T08785
Name
(RefSeq) laminin subunit alpha-2 isoform X1
KO
K05637
laminin, alpha 1/2
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04510
Focal adhesion
sscv04512
ECM-receptor interaction
sscv04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125990259
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
125990259
09142 Cell motility
04820 Cytoskeleton in muscle cells
125990259
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Laminin_G_1
Laminin_EGF
Laminin_G_2
Laminin_B
Laminin_N
Laminin_I
Laminin_II
Laminin_G_3
F5_F8_type_C
Motif
Other DBs
NCBI-GeneID:
125990259
NCBI-ProteinID:
XP_049613125
LinkDB
All DBs
Position
Unknown
AA seq
3254 aa
AA seq
DB search
MTRLGLLVLLAALLWRCGHAQQRGLFPAVLNLATMANITANATCGLSGPEMFCKLVEHVP
GQPIRNPQCRVCNQNSAKPFERHPIEYAIDGTNRWWQSPSIKNGREYHHVTITLDLKQVF
QIAYVIIKAANSPRPGNWILERSIDGETFEPWQFFALTDTECLTRFNMNPRTGPPSYTRD
DEVICTSFYSKIHPLENGEIHTSLINGRPSADDPSSTLLNFTSARYIRLVLQRIRTLNAD
LMTLTLRDPKDIDAIVTRRYYYSIKDISVGGMCICYGHAKACPLNRITKKFSCECEHNTC
GESCDRCCPGYHQQAWMAGTFVTRHVCEKCNCHGKADECYFNQTVADLSLSLDVQGQHRG
GGVCISCRDNTDGINCQTCVTGYYRPAGVDAEDDNPCVPCSCDSHGSIGQSCIEDASKAT
SSQPPGSCRCKEGFGGLRCDRCAIGYTGYPDCQPCNCSVEGSSNNDPCTSPCLCKENVEG
ANCGRCKLGFYNLQRDNPRGCEKCSCMGVVSQCSASTWVYQNESTLTGWYLSGDSGRIVW
PIHRVTPQYLSVHHADVAESLGSAYYWNTPDSYLGNKLPAYGGTMVYTVSYTIDQQEQGI
RVTSEPDLIIEGAGIKIMDRRYGRPVYPTSPSTNRIALLPENFLISDTAQPISRRDFMSV
LANMTRLMVRASYSTEPSAVYRLHLFSMQVGHPFAKGERTASAVEMCPCPPGYAGTSCEA
CVAGFRRVDGNLYNGVCEACQCHGHATQCHQITGHCLDCSHNTAGPHCETCQPGYYGDAT
HGSATDCQPCACPLNLPSNNFSPTCHLGEEGELLCDQCELGYTGPRCDRCSNGYFGQPAI
PGGSCQPCDCNGNLDLSTPGSCDPITGRCLHCRHGYGGVACDTCDDGFFGDAVIAKNCQP
CRCHINGSISQVCNKESGRCQCRENVVGRHCDDCLPNYWWDGERHECVACRCTHLGSVSQ
HCDLEGRCLCRPGFAGTRCDQRRQGYERRETRRPVERVPVEAVQRRWGGPARSGGCPRGA
YWPSAAAQTYGLATGGQCVPCHCNSFGSKSFDCDENGQCRCQPGVTGPKCDRCSRGFFNF
QEGGCTPCLCSHVGNNCDANTGQCVCPPNTLGERCDRCAPNHWGHDIMTGCKECGCSVVG
SVSQQCNINTGCCLCHDSFRGEKCNECQLGYRDFPQCTTCECNISGSEKETCDLERGICA
CADRTGKCSCKENVMGDHCDRCKPNTFGLSLQNPFGCSKCYCYGLTHSCVESQGLIRMWL
TLRPEQTVLPLVDKSSIVETHTGVSFQHPEILANSELVTTVLSEPYYWKLPQQFRGSMIT
AYGGKLKYAVYYEARDETGPSSYEPQVIIKGGANHNIVMTRHETGLQMGQLTRHEIDMTE
FEWRHADGQLMSRHDFMDVLFYVDYVLIKASHGNQMRHSRISEISLTVAEAGTPTRESEK
AYQIEKCECPLGYSGLSCEECAAGFYRLRSGSHTSAPASRVPTAVGMGSCVQCQCSGHST
TCDPDTSVCQNCQDNTEGDHCERCAPGFYGVVRGSRDDCKPCACPLTTPGNNFSPFCVTE
GYDDYRCTACPEGYEGKHCERCSSGYYGNPRIPGGQCEECKCSPWGSLPEPCDPVTGQCR
CTFGSSGRSCDQCMERHVCGPSGIISCDDECTGVLITDMDRLYRIITDITLTTPLPPPYK
ILYRFENMTEELKHMLSPQKAPERLLQLADSNLGSLVVEMDQLHSRATKVSADGEQVEDD
ANRIQKRAEVLEKFIRETLLGTQDLQSKADELNRMLARKDGTPEKSLKEMKEEIQAMLVE
MRKRQLGGKWLIADEELDLAEELFQKVKRMFGIPHQATEDLKAEINGKMSDHEGKLQEAQ
ELLHSAREKTRQTGLLAGHNQANLTFLEGRHAAVLGVKQEAQKVIGEAENLLDDANQLSD
NINKELEDAEEMRRDLGPLHDQLDDKVRHLTDGLSGGGIAHRVRAAEDHAQQLNESAAIL
DGILAEAKNLSFNATAAFKAYTNIKANIDEAEKEAKTAKQTASEALTTALGPEIPVKEEA
QGALQKSLKLLNQAKQLHNDVKDNAATVSGLKGRVKSAKDQTKDLLIAINVTMTTLKTMP
NDTTAKLAATKAVAAEANATAIDVLERLAALNFQVDGIQKNFSQLSYTVSAANQMIQDPD
KNIHAAGAKVKDLEVEADRLLEKLKPIKKLEDNLRRNISQIKELINQARKQANSIKVSVS
SGGDCLRSYRPDIRKGRYNTIILHVKTTTPDNLLFYLGSAKYVDFLALEMRKGKVYFLWD
VGSGVGRVEYPHLTIHDGNWHRIEASRNGLNGTISVYPLEGPRAGVVPNPNSANSPVTYT
ILDVDQNAYLFVGGILGTVKKADAVRTTTFTGCMGETFLDGKPIGLWNYRDRQGDCKGCV
VSPQASNGEGTVQLDGDGYASVARPTRWNPNVSSVTFKFRTFASDALLMYLATDDMKDFM
SLELEGGKVKMNFDLGSGAGSAISTHRQNDGHWKSLTMSRNKKQATVTIVDIDTSAEEKI
GATSLGTATGLNLKEKQSIYFGGLPTSGNYSMKSRSEVMLKRYVGCLREIEVSRTPYNLL
SSSDSIGVTKGCNVENLYTVSFSKPGFVELGGLSLAVGTEISLSFSTRADTGILLLAVGG
APPISQQVRHQNIISKRKRRQSGEPFLSVMLNKGSLEVLVFSGSHSLRRVIRRPEQGVLN
DGREHSLRIERLPGRSFAVQVDEEPKKDSPLPNDQPIILHRVFLGGIPSEVERTSNRVNV
PFQGCIWNLMVNSVLSDFSQAVSFENAEIGQCPSLARPLPYPTDEDEKEVETTKPHQPAP
IPAFVTSPPELSAEATAIVAPAATPTATPTSAEAPPTADTDSCPSAAAPVALEKSYQFGL
GRNSHMSFAFDDAKVRERLILEFELRTHEESGLVLYMARINHADFVSIQIKDGQVCLGYD
LGHGNTSGCVPYSINDGNWHKIRVARSKQRALLVVDGRYSKQMISPKKADLLDVVGMVYV
GGLPHNYTTKRIGPILFSINGCLRRLKMVGGAVTTKPAAPGRAEALTEDFKLDMETPTSS
HMVGRCFSATEPGTYFDGTGFLKAVANYRVGLDVSIALQFRTSRTNGVLLTISNQGNEGL
GLEIIQGRLLFHVDNGAGRITALHVPDGDGFCDGQWHSVVANKIRHRVELLVDGKQSQAQ
SSNARSNTCDTNDPIYVGGYPDGVRQAALTSRTSFRGCMRNLKITKASKTMDVHFNKALE
IKGVQPLSCPAIAA
NT seq
9765 nt
NT seq
+upstream
nt +downstream
nt
atgacgcggctcgggctgctggtgctcctcgccgcgttgctatggcgatgtggccacgcg
cagcaaagaggtttattcccggctgttttgaacttggcgaccatggcgaatattacagcc
aacgcaacatgtgggctatctgggccggagatgttctgtaaactagtagaacatgtacca
ggtcagcctataagaaacccacaatgtcgagtctgcaatcagaacagcgcaaaaccattt
gagcgccacccgatcgaatatgctatcgatgggaccaaccgctggtggcaaagtccgtcc
atcaagaacggaagggagtaccaccatgtgacgatcacgttggacttgaaacaggttttt
cagatagcttacgtgatcattaaggctgccaactcgcctcgcccgggtaactggatcttg
gagcgttcaatagatggcgagacctttgaaccgtggcagttcttcgctctcacagatacc
gagtgtctaaccaggtttaacatgaatccgaggacgggacctccgtcatacaccagagat
gatgaagttatctgcacatctttttattctaaaattcaccctttggaaaacggcgagatc
cacacttctttaatcaatggccgtcccagcgcggatgacccgtcctcgaccctgcttaac
ttcacctcggcccgctacatccgactggtgcttcagaggatcagaacgctcaacgccgac
ctcatgacgctgaccctacgcgaccccaaagatatcgacgctatcgtaacgagacggtac
tattattccattaaggatatttcagtgggagggatgtgcatctgttacggtcacgccaag
gcctgtccactcaacagaattaccaagaagtttagctgcgaatgtgaacacaacacatgc
ggcgagagctgcgatcgttgttgccctggttaccaccaacaagcctggatggccggcacc
ttcgtcactcgacatgtttgtgagaaatgtaactgccacgggaaggctgacgaatgctac
tttaatcagactgtagctgacctttcgctcagcctggatgtccaaggtcagcaccgaggc
ggtggggtgtgtatttcatgccgtgacaacacggatgggatcaactgccagacttgcgtt
accggctattacagacctgcaggagtggacgccgaggatgacaacccttgcgttccttgc
tcgtgtgactcgcatggttcgattggtcaaagttgtattgaggatgcaagcaaggcgacg
tcttcccagccaccagggtcatgccgttgtaaggaaggctttggcggcctgcgatgtgac
agatgtgcaattggttatacgggctaccccgactgtcagccgtgtaactgcagcgttgag
ggaagcagcaacaatgacccgtgtacttcaccctgcttgtgcaaggagaacgtggaagga
gcaaattgcggccgctgcaaactcggcttctacaatctccagcgcgacaatccccgcggc
tgcgagaaatgttcttgcatgggcgtagtgagccagtgctctgcctccacgtgggtttat
cagaatgagagcacactgactggttggtacttgagcggagattctggacgaatcgtgtgg
cccatccacagagtgacacctcaatatctaagtgtccaccatgcagatgttgcggaaagc
cttggttctgcttactactggaatacacctgactcatatttgggaaacaagctacccgca
tatggaggcaccatggtgtacactgtgtcttacactatagatcagcaggaacagggtatt
agagtcacttcagagccagaccttatcattgagggtgctgggatcaagattatggacaga
aggtacggacgacccgtatatccgacttcaccgagtaccaacaggatcgctctccttcct
gagaacttcctgatttccgatactgctcaaccaatcagtcgcagggactttatgagcgtc
ttggcaaacatgaccagactgatggtcagagcctcttacagtaccgaaccaagtgctgtg
tacagactccacttattctccatgcaagtaggtcatccatttgccaaaggagaaagaaca
gcatcggctgtcgaaatgtgcccgtgtcctcccgggtatgctggaacgtcatgtgaggct
tgtgtcgctggattccgacgagtggatggaaacttatacaatggcgtgtgtgaagcgtgt
caatgtcacggtcatgccacacaatgccaccaaatcacaggacactgcctggattgttcc
cacaacaccgcaggcccccactgtgagacgtgccagcccggttactacggcgatgccacc
cacgggtcagctacagattgtcagccgtgcgcctgccctctcaatttgcccagtaacaat
ttcagcccaacctgccaccttggagaggaaggagaacttctgtgtgaccaatgtgagctt
ggatacactggaccaagatgtgacagatgctccaacgggtatttcggacaacccgcaatc
ccgggaggttcctgccaaccctgcgattgcaacggtaacctggacctgtctacacccggc
agctgtgatccaatcacaggccggtgtctgcactgtcgtcatggttacggcggcgtggct
tgcgacacttgtgatgatggcttcttcggcgatgctgtcattgcgaaaaactgtcagccg
tgccgttgccatattaatggttccatctcacaagtctgcaataaggagagcgggcggtgc
cagtgcagggaaaatgtggttggacgccattgtgatgattgcttgcctaattactggtgg
gacggtgagcgtcacgagtgcgtggcctgccgttgcacccacctgggctccgtctctcaa
cactgcgaccttgagggccgctgtctgtgtcgcccgggatttgcgggcacgcgttgcgac
cagcgtcgccaaggttacgagagacgggagacgcgacgcccggtggagcgcgtccccgtg
gaggccgtgcagagaagatggggcggcccggctcgctcagggggttgccctcgtggggcc
tactggcccagtgcggcggctcaaacgtacggcctggccacaggtggacagtgcgtgccg
tgtcactgtaactcctttggatcgaaatcgtttgactgtgacgaaaacggtcagtgtcga
tgccagccgggtgtcaccggaccgaaatgtgaccgctgctcacgaggattcttcaacttc
caggagggggggtgtacaccatgtctctgcagccatgtgggcaataactgtgacgccaac
acgggccagtgtgtctgtcctccaaacacacttggcgagaggtgcgaccgctgcgcccca
aaccactggggccacgatatcatgacgggatgcaaggaatgtggctgtagtgtggtgggc
tcagtgagccagcaatgcaacatcaacacaggctgctgcctttgccatgactccttcaga
ggagagaaatgcaatgaatgtcagctaggctacagagactttcctcagtgcaccacgtgc
gagtgtaacatctccggatcggaaaaagagacatgtgaccttgagcgagggatttgcgcc
tgtgccgatcgaaccgggaagtgcagctgcaaggaaaacgtgatgggcgaccactgtgac
cgttgcaagcccaacacttttggattgtccctgcaaaatccgttcggctgcagcaaatgt
tactgttacggtttgacacactcctgcgttgagtcgcaaggtctcattaggatgtggcta
acgctgaggccagagcagactgtgctccccctggtggacaaaagcagtattgttgagacg
catacaggcgtaagcttccaacacccggagatcctcgcaaactctgagctggtcaccacg
gttctttcggagccttactactggaaactaccacaacagtttcgaggttccatgatcaca
gcatacggcgggaagttgaagtacgccgtctactacgaggccagagatgaaaccgggcct
tcctcgtacgagccccaggtcatcattaagggcggagctaaccacaacatcgtgatgaca
cgtcacgaaactggactccagatgggtcaactcacacggcacgagattgacatgacagag
ttcgagtggaggcatgcagatggacaactaatgtcacgccatgatttcatggacgttttg
ttctatgtggactacgtcctcattaaggcatcacatggcaaccagatgagacacagccgt
atttcagaaataagtctcactgtggcggaagctggcacaccaacccgggagagcgaaaaa
gcctaccaaatcgaaaaatgcgaatgtccacttgggtattccggattgtcctgcgaggag
tgtgctgcaggtttctaccgccttcgcagcggctcgcacacatctgctccggcctccagg
gtccccactgctgtggggatgggcagctgcgttcagtgccagtgcagcggccactccacc
acctgtgaccctgacacgtctgtatgccagaactgccaagacaacacggagggggatcac
tgtgaacgctgtgctcccggattctacggcgtggtccgaggatcccgtgatgactgcaaa
ccatgcgcctgcccacttactactcccgggaacaattttagcccattctgcgtcaccgaa
ggctatgatgactatcgttgcacagcttgtccagaaggatatgagggaaaacactgcgaa
aggtgttccagcggttactatggtaaccctcggatacctggtggtcaatgcgaggagtgt
aagtgttctccgtgggggtccttgcccgaaccatgtgaccccgtcacaggccaatgccgg
tgcacgttcgggtcttctgggaggtcttgtgaccagtgcatggaaaggcatgtttgtgga
ccatctgggatcatctcgtgcgacgacgagtgcacaggcgtgctgatcaccgacatggac
cggctgtatcgcatcatcactgacatcacgctgaccacgcccctgccacctccttacaag
atcctgtaccgctttgaaaacatgaccgaagaactcaagcacatgctatcacctcagaaa
gctccagagagattactacagctggctgactccaatttgggatcgctggtagtagagatg
gaccagttacacagccgggcaactaaggtatctgccgatggagaacaagtggaagatgat
gccaacagaattcaaaagcgagccgaggtcctggaaaagttcatcagggaaaccttgctg
ggaactcaagacctccaatccaaagctgacgagctgaaccgaatgctggcgcgcaaagac
ggaacgccggaaaaaagtttgaaggagatgaaggaggagattcaagccatgctggttgag
atgagaaaacgacagctgggagggaaatggctcattgcggacgaagagctggacctagca
gaagagttgttccaaaaagtaaaaaggatgttcggcattcctcatcaagccacagaagac
ctaaaagccgagattaatggcaagatgtcagaccatgagggcaaactacaggaggcccaa
gagctccttcactctgcccgtgagaagaccaggcagactggtttgctggctggacacaac
caagccaatctcaccttcttggaggggaggcatgctgcggtccttggggtgaaacaagaa
gcacagaaggtcattggggaagcagaaaaccttctggatgacgccaaccaactttcagac
aacatcaataaagagttagaggacgcagaggagatgagaagagatctcggtcctcttcac
gaccagctggatgacaaagtccgacacctgacggacggtttgagcggcggcggtatagct
catcgtgtccgcgctgccgaggatcacgcgcaacagcttaatgaatccgctgcaatttta
gatggaatcttggccgaagcgaagaatctctccttcaacgcaacagctgcttttaaagca
tatacaaatattaaagccaacatagacgaagcagagaaagaagcaaagacggccaaacag
actgcatcagaagcactgacaacggctttaggtccggagatcccagtgaaggaggaagct
caaggtgcccttcagaagagtctcaagctgcttaaccaggctaagcaacttcataatgat
gtcaaagacaatgccgcgaccgtgtccggattgaagggcagagtcaagtcagcaaaagac
caaaccaaagacctgctcatcgctatcaatgtaaccatgacaacactcaagacaatgccc
aatgacaccacggccaagttggcggcgacaaaagctgtggccgctgaggccaacgctacg
gccatcgacgtcctggaacgcctggcggccttgaactttcaggtcgacggcattcagaag
aacttcagtcaattgtcctatacggtcagcgccgccaatcagatgatccaggacccggat
aaaaatatccacgcggccggagctaaagtgaaggatttagaggttgaagctgataggctg
ttggagaaattgaagcctatcaaaaagctagaggacaacctgaggcgaaacatctcgcaa
atcaaggaactgattaaccaagccaggaaacaagccaactcgatcaaagtgtcggtgtcg
tcaggcggcgactgtctgaggagttaccgccctgacatcaggaagggcaggtacaacacc
atcattcttcacgtcaaaaccaccacgcctgataatctgctattctaccttggttctgcc
aaatatgttgatttcttggctctggagatgcgaaagggcaaagtgtatttcctttgggac
gttggttctggtgtgggacgagtagaatacccacatctcaccatccatgacgggaactgg
catagaatagaagcttctcgtaacggattgaacgggaccatctcagtgtaccctctggaa
ggtccgagggccggcgttgtgccgaacccaaacagcgcaaactcacccgtaacttacacc
atcctggacgtggaccagaacgcatacctgtttgtgggcggaatcctcggcacggtcaag
aaagcggatgctgtgaggacaacaacttttacgggctgcatgggggaaaccttcctggac
ggaaaaccaattggactgtggaactacagggacaggcagggagactgtaaaggatgcgtt
gtcagcccccaggcatcaaatggtgaaggaactgtccagctggacggggacggctacgcc
tcagtggcacgacccacaagatggaatccgaatgtttccagtgttacattcaaattccga
acgttcgcttccgatgcgctgctcatgtatctggcaactgatgacatgaaagactttatg
tccttggagctagaaggtggcaaggtgaagatgaactttgatctgggctcaggagccggc
agtgccatatcaactcaccgacaaaacgacgggcactggaaatccctcaccatgtctcgt
aacaagaagcaagccacggtgaccatcgtggacatcgacaccagtgctgaggaaaaaatc
ggggcgacgtctttaggaacagccactgggctgaacctcaaggagaagcagagtatttat
tttggaggtctgcctaccagtggaaactacagcatgaaatccaggtcggaggtcatgcta
aagcgctatgtcggctgccttcgggagattgaagtatcccgaactccatataatctcctc
agtagttccgattccatcggggttacaaaaggatgtaatgtcgagaatctatacacagtc
agcttctccaaaccgggcttcgtggagctcggcgggttgtccctggcggtcggcaccgag
atcagcctgtcgttcagcacccgagcggacactggaatcctcctgttagcagtgggcgga
gctccgcccattagccaacaggtccgtcaccaaaacatcatctcgaagaggaaacgaaga
caatcaggagagcctttcctctctgtgatgctgaacaaaggctcactggaggttctggtg
ttctcgggcagccacagtctgcgtcgagtcatcagacggcctgagcaaggcgtcctgaat
gacggcagagagcactcgttgcgtatcgagagactacccggcagatcttttgcagtgcaa
gtagatgaggagccaaagaaggactctccacttcccaacgaccagccgatcatcttgcat
cgtgtgttcctcggtggtattccttctgaggtggagaggacatccaacagggtcaacgtt
cccttccaaggatgtatatggaatctcatggtcaactctgttctgtcagatttctcccag
gcggtttcctttgaaaacgccgaaatcggccagtgtcccagccttgcccgtcctcttccc
tacccgacggacgaggatgagaaggaagtagaaacgaccaaaccccaccaacccgcgccc
attcctgcatttgttacatcgcctcctgaactttctgccgaagccactgcgattgttgca
cctgctgccacacctactgctacacctacttctgctgaagctccgcccactgctgacacg
gactcatgcccctcggctgcggcccctgtggccctggagaagtcttaccagtttggactg
ggaaggaacagtcacatgagctttgccttcgatgacgccaaagtgagagaaaggttgatt
ttggagttcgagctgaggacacatgaggaatcgggactggttctctacatggccagaatc
aaccacgctgactttgtctccattcagattaaggatggacaggtgtgcctgggttatgac
ctcggtcatggtaacacatctggatgcgtcccctactccattaatgacgggaactggcat
aagatccgtgtggctcgcagcaagcagcgggcactcctggtggtggatggccgatacagc
aaacaaatgattagccccaaaaaggctgacctgttagacgtggtgggaatggtgtacgtt
ggcggcctaccacacaactacaccaccaagaggatcgggccgattcttttcagcatcaac
gggtgcctgcgtcgcttaaagatggtgggaggtgccgtcaccacaaagcctgccgctccg
ggtcgtgccgaggcgcttactgaagactttaaacttgatatggagacgccaacgtccagt
cacatggtcgggagatgtttctccgccaccgagccaggaacttattttgacggaaccgga
tttttgaaagcagtggccaactatcgagtgggtctggatgtgtccatcgcattgcagttc
cgaaccagcagaactaacggcgtccttttgaccatcagtaatcaaggcaacgaaggactc
ggtctagaaattatccagggccggctgctcttccacgtggacaacggcgccggacgaatc
acggcgctgcacgtgcccgacggcgacgggttctgtgacggccagtggcactctgtcgtc
gccaacaagattcgccacagggtggagctgctggtggatgggaagcagagtcaagctcag
agttccaatgcacgctccaacacctgtgacaccaacgaccccatttatgtgggaggctac
ccggacggtgtccgtcaggctgctctgaccagccgcacgtccttcagaggttgcatgagg
aacctgaagatcaccaaagcctcaaagaccatggatgtgcacttcaacaaagctctagaa
atcaaaggagtccaaccactttcctgccccgccattgctgcttag
DBGET
integrated database retrieval system
