Syngnathus scovelli (Gulf pipefish): 125990328
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Entry
125990328 CDS
T08785
Symbol
lrfn5b
Name
(RefSeq) leucine-rich repeat and fibronectin type-III domain-containing protein 5
KO
K16358
leucine-rich repeat and fibronectin type-III domain-containing protein 5
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
125990328 (lrfn5b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
sscv04515
]
125990328 (lrfn5b)
04990 Domain-containing proteins not elsewhere classified [BR:
sscv04990
]
125990328 (lrfn5b)
Cell adhesion molecules [BR:
sscv04515
]
Immunoglobulin superfamily
SALM family
125990328 (lrfn5b)
Domain-containing proteins not elsewhere classified [BR:
sscv04990
]
Fibronectin (FN) domain-containing proteins
Fibronectin type III domain-containing proteins
125990328 (lrfn5b)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
I-set
Ig_3
LRR_4
LRR_5
ig
Ig_2
LRR_9
LRR_14
Sp38
fn3
V-set
LRR_EndoS
C2-set_2
LRR_Zer-1
FN3_DSCAM-DSCAML_C
Motif
Other DBs
NCBI-GeneID:
125990328
NCBI-ProteinID:
XP_049613335
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All DBs
Position
20:6105295..6121896
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AA seq
798 aa
AA seq
DB search
METILLYLMVLCAAVKAHKVQVCPKRCVCQVLNPNLATLCDKKGLLFVPPNIDRHTVEMR
LGDNFVTSIKRKDFANMTKLVDLTLSRNTIGNIVPHAFKDLENLRALHLDSNRLTRITND
TFSGMSKLHHLILNNNQLTHIQIGAFNDLTALEELDLSYNNLESVPWVAIQRMSSLHTLN
LDHNMLSYIPEGTFSGLQKLKRLDVTSNKLQKLPPDPIFQRAGVLATSGIMGPTSFALSF
GGNPLRCNCELLWLRRLRREDDLETCASPQHLAGRYFWTVSEEEFLCEPPLITRHSQELR
ALEGQSVTLRCKARGDPDPIIHWIAPDGRLMSNSSRASVHTDGTLDILISTVKDSGSFTC
VASNPAGEAQQKVDLVIAKLPHITNNTAAEQEPDPGSSDIATVTKTGAEGPGGGVPLGNA
KTGLEKKVVIAEATATSAVVHFNFQRNIPGIRMFQIQYNGTYDDSLVYRMIPPTSESILV
NNLAAGTQYDLCVLAIYDDQITSLTATRVIGCVHFSTDPQYLRCHFMQSQFLGGTIVVII
GGIIVASVLAFIIFLIVRYRVCNQGDADKALEMGDIRSLSSDGQLQGCGLPKSLSKQVLR
PEKNDKECLRVALPPLEPVKQRAPIANTGTAKPSLPDCTVSTSAASHSWHPASPGVPRVK
RPATSSKPSDILRAEGQADVELNNVNRNNSSEAKVPPVVSRAQAHKWTAAPRVPRARQAP
RQYMTVPAGAIRVNRRHSLNTDSSRERLYVAYPKAGASLRSKRSLSMSGELPQMHNAANI
QRARDKLSRSEWLLESTL
NT seq
2397 nt
NT seq
+upstream
nt +downstream
nt
atggagaccatcctgctttatctgatggtcctatgtgcggctgtcaaggcccacaaggtt
caagtttgtcccaagcgttgcgtgtgccaggtgctcaaccctaatttggccacgctttgc
gacaaaaagggactgctattcgtgccccccaacatcgaccggcatacggtggaaatgcgc
ctgggggataattttgtcacaagcatcaagcgcaaggactttgctaacatgaccaaactg
gtggacctgacgctttctcgcaacaccatcgggaatattgtgccgcacgcctttaaggac
ctggagaacctgcgggcgctccacctggacagcaaccggctgacacgcatcaccaatgac
accttcagcggcatgtccaagttgcaccacctcatcctcaacaacaaccagctcacacac
attcagattggggccttcaacgacctgacggctctggaggagctcgacctgtcctacaac
aatctagagagcgtcccctgggtggccatccagagaatgtccagcctccacaccctcaac
ctagatcataacatgctcagctacatcccagagggcaccttctcgggtctacagaagctc
aaaaggctggatgtgacctccaacaagctccagaagctgccaccggaccccattttccag
agagcgggggtcctggccacctcggggatcatggggcccacttcgttcgcattaagcttc
ggcgggaaccctctgcggtgcaactgcgagctactgtggctaagaaggttgcggcgggag
gacgatctggagacatgcgcttcgcctcaacacctcgcaggacgctatttctggaccgtg
tcggaagaggagtttctgtgcgagcctcctctcatcaccagacactctcaggagctgcgg
gccctggagggtcagagtgtgacgctacgttgtaaggctcggggggatccagatcccatc
atccactggattgcccctgacggacgcctcatgtcgaactcttccagagcctccgtgcat
accgacggaactctcgacatactcatcagcaccgtcaaggactcaggttccttcacctgt
gtggcgtccaacccagccggagaagcccagcagaaggtggacctggtcattgcgaagctg
cctcacatcaccaacaacacggctgctgagcaggagcccgacccggggtcttccgacatt
gccacggtcaccaagacaggagcagagggtccgggcggcggggtgcccctggggaacgcc
aagactggcctggagaagaaggtggtcatagccgaggctacggccacctcggctgtggtc
cactttaacttccagagaaacattccgggcatccgcatgttccagatccaatacaacggg
acctacgacgattcactggtttacagaatgatcccgcccaccagtgagagcatcctggtc
aacaacctagcagcgggaacgcagtacgacctgtgcgtgctggccatctatgacgaccag
atcacctcgctgaccgccacccgggtcattggctgtgttcacttttccaccgatccgcag
tatctgagatgccacttcatgcagtcccagtttctaggcgggaccattgtggtcatcatt
ggagggattatcgtggcttccgtgctggcatttattatcttcctcattgtgcgctaccgg
gtgtgcaaccagggagatgcagataaggctctggagatgggtgatattcgttccctgagc
agcgacgggcaacttcagggctgcggactccccaagtctttgtccaagcaggtcctacgt
ccggagaagaacgacaaggagtgtctgcgagtcgctctaccgcccttggagccggtcaag
cagcgagcacccatcgccaacaccggcacagccaaaccttccctgcctgactgcaccgtg
tctacttcggccgccagccacagttggcacccggcttccccgggtgtcccgagggtgaag
cgcccggcgacttcgtcgaaaccgtccgacatccttcgggctgaggggcaagctgacgtt
gaactcaacaacgtcaaccgtaataactcctcggaggcaaaagtgccacccgtggtatcc
cgcgcccaagcccacaaatggactgcagctcccagggtcccgcgggcacgtcaggcccct
cgtcagtacatgacggtgccggcgggcgccatcagagtcaaccgcagacactctctcaac
acggactcatccagggagcggctgtacgtggcgtaccccaaagcgggggccagcctgcgc
tccaagcgaagcctgtccatgagcggagaacttccgcagatgcacaacgccgcaaacatt
cagcgggcccgtgacaagctgtcccgctctgagtggctcctggagagcaccctatga
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