Syngnathus scovelli (Gulf pipefish): 125990347
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Entry
125990347 CDS
T08785
Symbol
vps18
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04140
Autophagy - animal
sscv04148
Efferocytosis
sscv05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
125990347 (vps18)
04148 Efferocytosis
125990347 (vps18)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
125990347 (vps18)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sscv04131
]
125990347 (vps18)
Membrane trafficking [BR:
sscv04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
125990347 (vps18)
Hops complex
125990347 (vps18)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pep3_Vps18
Clathrin
zf-RING_Vps41
zf-RING_16
zf-C3HC4_2
zf-RING_5
zf_RING_Vps8
zf-RING_2
KNOX2
zf-RING_UBOX
zf-ANAPC11
DUF1664
zf-rbx1
DUF5600
DUF4446
HAP1_N
Apolipoprotein
zf_RING_Vps8_fungal
zf-C4H2
Motif
Other DBs
NCBI-GeneID:
125990347
NCBI-ProteinID:
XP_049613404
LinkDB
All DBs
Position
20:complement(10109677..10113747)
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AA seq
981 aa
AA seq
DB search
MASILDEYEDSQNSRQSAQQHGRLASANIGITHSGFVNVRLEEEKPIFNKQRIDFTPPER
INHLIVCNNQLCMSLGKDTLLRIDLAKPDHPNQIELGRKDDSKVHKLFLDPTGSHLLISL
STSECLYLNRNTQKVRSLSRWRGHLVESVGWNKLLGNETNTGPILVGTGQGVIFEAEISA
TEGSLFNTNPDQYFRQVHSLEEDGRPAPVCCLEVERGLENKYFIIATTRKRLFQFVGKVA
EGTEQQGFSSIFTQNQDLLPSFQEFPANMGYSEITFYTSKLRTSPKAFAWMMGNGVLYGQ
LDYVRPDSLLSDVQVWEYTTDIDLSFNKPISIVLTQFHFLLLLHDRVKAVCTLNGQVVHE
DVFPDKFGPLKRMIKDPSGGLVWIYTEHAVFRYHIQRESRDVWQMYMSMNKFDLAKEYCR
ERPECMDMVLAKEAEHCFQNKRYLESAKCYAMTQNYFEEIALKFIEAKQEEALKEFLLKK
LGNLKPSERTQITLLVIWLSELYLNRLGQLEDDGKASVLFWETRDEFRQFLNTSKHRECL
FNNRCTIYDLLASHGNVDDMVYFSVVMQDYERVVSHYCQHDDYYAALDVLAKHCDEKLFY
KFSPVLMQHIPEKVVDAWIQMGKRLDPKKLIPALMNYSHKGSSQQINETVRYMEFCVHEL
HVTEEAIHNYLLSLYAKYKPDSLLRYLEEAGTYASEIHYDLKYALRLCAEHGYLRACVLV
YRIMELYEEAVDLALQVDVDLAKSCADLPEDDEELRKKLWLKIARHVVQEEKDVKKAMNC
LSSCDLLKIEDILPFFPDFVTIDHFKEAICNSLEEYNKHIEELKQEMEEATESAKRIRED
IQEMRNKYGVVDSQDKCSACDFPLLNRPFYLFLCGHMFHSDCLLQEVMPHLSAYKLSRLE
ELQKKLSASTQASRSRHRPVPNEEGDAPSLGKGAASREQMKSDLDDMVASECVYCGELMI
RSVDKPFIDPKKFEEDKSSWL
NT seq
2946 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaatattggacgagtacgaggactcgcaaaacagcaggcaaagcgcgcagcag
cacggccgcctggcgagcgccaatatcgggataacacactcgggtttcgtcaatgtgcga
ctcgaggaggaaaaacccattttcaacaagcagaggatcgattttacgccgcccgagagg
ataaatcatctcatagtttgcaataatcagttatgcatgagtttggggaaagacaccctg
ctgaggattgatttggcgaaacctgatcaccccaatcagattgagcttgggaggaaagat
gacagcaaagtgcataaactcttcctggatccgacgggctcccacttgctgatcagtttg
agcaccagcgagtgtctgtatctgaacaggaacacacaaaaggtgcgcagtctgtctcgc
tggcggggccacctagtggagagtgtgggttggaacaagctgcttggcaacgagaccaac
acggggcccatcttggtcggcacggggcaaggcgtcatcttcgaggctgagatctctgcc
accgaggggagcctctttaacaccaacccggaccagtacttcagacaagtccactccctg
gaggaagacgggaggccggcgcccgtgtgctgcctggaggtggagcgaggcctggagaac
aaatacttcatcatcgccaccacccgcaagcgcctcttccagtttgtgggcaaggtggcc
gagggcacggagcagcagggcttcagctccatcttcacccagaaccaggacctgctcccc
agctttcaggagttcccggccaacatgggctacagcgagatcacgttctatacgtctaag
ctgcgtacctcccccaaggccttcgcctggatgatgggcaacggggtgctctacgggcag
ctggactacgtcagaccggactcgctcctgagtgacgtgcaggtgtgggagtacaccacc
gacatcgatctgtctttcaacaagcccatctccatcgtgctgacccagttccacttcctg
ctgctgctgcacgatcgagtcaaggcggtctgcacgctgaatggtcaggtggttcatgag
gacgtgttcccggacaagtttggccccctcaagaggatgattaaggacccatcagggggt
ttggtgtggatctacacggagcacgccgtgttccgctaccacatccagcgtgagtcccgt
gacgtgtggcagatgtacatgagcatgaacaagttcgacctggccaaggagtactgccgc
gagcgacccgaatgcatggacatggtcctggccaaggaggccgagcactgcttccagaac
aagcgctacctggagagcgccaagtgctacgccatgacgcagaactactttgaggagatc
gcgctcaagttcatcgaagccaagcaggaggaggccctgaaggagttcctgctgaagaag
ctgggcaatctgaagccaagcgagaggacgcagatcaccttgctcgtcatctggctgtcc
gaactctacttgaaccggctgggccagttagaagatgacggcaaggccagcgtcctcttc
tgggagacccgcgacgagttccgccagttcctgaacacctccaagcaccgcgagtgcctg
ttcaacaaccgctgcaccatctacgacctgctggccagccacggcaacgtggacgacatg
gtgtacttctcggtggtcatgcaggactacgagagggtggtgtcgcactactgccagcac
gacgactactacgccgctctggacgtgctggccaagcactgcgacgagaagctcttctac
aagttctcccccgtgctcatgcagcacatccccgaaaaggtggtggacgcctggatccaa
atgggcaagcggctggaccccaagaagctcatcccggcgttgatgaactacagccacaag
ggaagcagccagcagatcaacgagacggtgcgctacatggagttctgcgtgcacgagctg
cacgtgacagaggaggccatccataactacctgctgtcactctacgccaagtacaagccc
gactcgctgctgcgctacctggaggaggcgggcacgtacgcctcggagatccactacgac
ctgaagtacgcgctcaggctgtgcgctgaacacggctacctacgtgcctgcgttctggtc
tacagaattatggagctgtacgaggaagccgtagatctcgccttgcaagtggacgtggat
ttggccaagagctgcgcggacctgcctgaggatgacgaggagctacgaaagaagctctgg
ctgaagatcgcccgccatgtggtgcaggaggagaaggacgtgaagaaggccatgaactgc
ttgtccagctgcgacctgctcaaaatcgaagacattctgcctttctttcccgactttgtc
accatcgaccattttaaggaggccatctgcaactccctggaggagtacaacaagcacatc
gaggagctgaagcaggaaatggaggaggccactgaaagcgccaaacgcatccgagaagac
atccaggaaatgcggaataaatatggcgtggtggactcccaggataagtgctcagcctgc
gactttccgttgctcaacaggcccttttatttatttttgtgtggacacatgttccactcc
gactgccttctgcaggaagtgatgcctcatttgtctgcctacaagctgagccgcctggag
gagctgcaaaagaagctctcggcctccacgcaggcgtccaggtcgcgacaccggcccgtc
ccgaacgaggaaggagacgcgccaagcctcggaaagggcgccgccagtcgcgagcagatg
aaatccgacctggatgacatggtcgcgtctgaatgcgtgtactgtggagagctgatgatc
agatctgtggacaagccctttatcgatccaaagaagtttgaggaggataaatccagctgg
ctgtga
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