Syngnathus scovelli (Gulf pipefish): 125990412
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Entry
125990412 CDS
T08785
Symbol
ddx1
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sscv03041
]
125990412 (ddx1)
03016 Transfer RNA biogenesis [BR:
sscv03016
]
125990412 (ddx1)
Enzymes [BR:
sscv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125990412 (ddx1)
Spliceosome [BR:
sscv03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
125990412 (ddx1)
Transfer RNA biogenesis [BR:
sscv03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
125990412 (ddx1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
SPRY
Helicase_C
ResIII
CMS1
DUF5766
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
125990412
NCBI-ProteinID:
XP_049613523
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All DBs
Position
20:complement(10616247..10646410)
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AA seq
740 aa
AA seq
DB search
MAAYSELGVMPEIARAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVHETLTDQQQGKKGRANVKTGGAVFNNWQMNPYDRSAAFAIGADGLCCQSREFKEWH
GCRSTKAVSKGKYYYEVTCHDQGLCRIGWCTSQAALDLGTDKYGFGFGGTGKKSNNKQFD
SYGEEFTMHDTIGCYLDLDKGHISFSKNGNDLGLAFEIPQNLRSQPFFASCVLKNAELKF
NFGSEDFKNPPKSGFVALDQAADAHTVKSSQTGSAKVSQVKGSSNAPKALIIEPSKELAE
QTLNNVTQFKKYVIDPKLRELLVIGGVAAKEQMAALEQGVDIVVGTPGRLDDLISTGKLS
LSQVRFLVLDECDGLLSAGYTDFINRVHHQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE
RIMHFPTWVDLKGEDSVPETVHHVVVPVNPKADRTWERLGKSQIRTDEVHAKDNTRPGSN
SAEMWSEAIKVLKGEYTVRAIKEHKMDQAIIFCRTKIDCDNMEQYFIQQGGGPESKTHQF
SCVCLHGDRKPQERKNNLDRFKRKEVRLLICTDVAARGIDIRGVPYVINVTLPDEKQNYV
HRIGRVGRAERMGLAISLVAMEKEKVWYHVCANRGRGCYNTRLKQDGGCTIWYNEKELLS
EIEEHLKCTITQCEPDIKVPVDDFDGKVTYGQRRKLGGGNYKGHVDVLAPTVQELANLER
EAQTSFLHLGYLPNQLFKAF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcagcatattctgaattgggcgtgatgcccgaaatcgcgagggccgtggaggaaatg
gactggctgcttcccactgacatccaagcggagtccattccattgattctcggtggagga
gatgtcctcatggcagcagaaaccggtagcggtaaaacaggagccttcagcattcccgtc
attcagattgtgcatgaaacgctgaccgaccaacagcagggcaagaaaggcagagccaac
gtcaaaacgggcggagcggtcttcaacaattggcagatgaacccttatgaccgaagtgct
gcatttgccatcggggcggacggcctgtgttgccagagccgagagtttaaggaatggcac
ggctgtcgctccaccaaggccgtgagcaaagggaagtactactacgaggtcacgtgccac
gaccaaggcctgtgtcgcatcggctggtgcaccagccaggcggctctcgacttgggaacg
gacaagtacggttttggttttggcggaaccgggaagaaatcaaacaacaagcaatttgac
agctatggcgaggagttcaccatgcacgacacgatcggatgctacctcgacttagacaag
ggccacatttccttctccaaaaatggtaacgatctgggtttggctttcgagatccctcag
aatctgaggagtcagcccttctttgcctcttgcgtcctcaagaacgcagagctgaaattc
aactttggcagcgaggactttaagaatccacccaagagcggctttgtcgccttggatcag
gcggcggatgctcacacggtcaagtcttcacagacggggagcgccaaggtgagtcaggtc
aaagggtccagcaacgcccccaaggcgctcatcatcgagccgtccaaggagctggccgag
cagacgctcaacaacgtgacgcagttcaagaaatacgtgatcgaccccaagctcagagag
ctgctggtgatcggcggtgtggccgccaaggagcaaatggccgccctggagcaaggcgtg
gacattgtggtggggacccccggtcgtctggacgacctcatatccaccggaaaactcagt
ctctcccaagtccgctttctggtcctggacgaatgcgacgggctcctgtcggcgggctac
acggacttcatcaacagagtccatcatcagatccctcaagtgacatccgacgggaaacgg
ctgcaggtgatcgtgtgctcggccacgctgcactcgttcgacgtgaagaagctgtcggag
cgcatcatgcacttccccacctgggtcgacctgaagggcgaggactcggtgcccgagacc
gtgcaccacgtggtcgtgcccgtcaaccccaaggccgaccggacctgggagcggctgggc
aagagccagatccggacagatgaagtccacgccaaagacaacaccagaccagggagcaac
tcagcagaaatgtggtcggaggccatcaaggtactgaaaggcgagtacacggtgagggcc
atcaaagagcacaaaatggaccaggccatcatcttctgccgcaccaagatcgactgtgac
aacatggagcagtactttatccagcaaggaggaggcccggagagtaaaacccaccagttt
tcctgcgtctgtctccatggcgatcgcaagccccaagagaggaagaacaacttggatcgc
ttcaagagaaaggaagtgcggcttctcatctgcaccgacgtggccgccagggggatcgac
atccgcggcgttccctacgtgattaacgtgacgctgccggacgagaagcagaactacgtc
caccgcatcggcagagtgggtcgggcagagagaatgggcttggccatctcattggttgcc
atggagaaggagaaggtgtggtaccacgtgtgcgccaatcgaggcaggggctgctacaac
acgcgactcaagcaggacggcggctgcaccatctggtacaacgagaaagagctcctttcg
gaaatcgaggaacacctcaagtgcaccatcacccagtgcgagcccgacatcaaggtcccc
gtggacgattttgacgggaaggtcacttatggccaacgccggaagctgggaggtggcaac
tacaagggtcacgtcgatgtgctggcccccaccgtgcaagaactggccaacctggagaga
gaagcccagacgtccttcctccacctcggatacttgcccaaccagctcttcaaagccttc
tga
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