Syngnathus scovelli (Gulf pipefish): 125990414
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Entry
125990414 CDS
T08785
Symbol
hbs1l
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125990414 (hbs1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sscv03019
]
125990414 (hbs1l)
Messenger RNA biogenesis [BR:
sscv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
125990414 (hbs1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
AAA_22
DO-GTPase2
Motif
Other DBs
NCBI-GeneID:
125990414
NCBI-ProteinID:
XP_049613525
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All DBs
Position
20:10735802..10745254
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AA seq
689 aa
AA seq
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MSRHRNVRGYNYDEDFEDDDMYGQSVEDDYCISPATANQFIYSRREKQVPKEEPLEEEEY
EEDVPMSPNVSHNLDPLEQAKLFSCLDHMRAVLGDSMPDSVLNQAAIRCGFDAQRALDVI
LSEDPKTAPDNAAVEKAPLPQRSKQAAVIEKAKSRDASNNKLDCEVVPKVARMTVSGKKQ
TMGFDVPSGDNGVTAAVARRGNSPEITAATLAAGESTPKRPETPSRGSNDDELAGGVTPG
RSAGKARQAIDVKAELEKRQGGKPLLNLVVIGHVDAGKSTLMGHLLYLLGNVNKRTMHKY
ETESKKAGKASFAYAWVLDETGEERDRGVTMDVGMTKFETNSKVVTLMDAPGHKDFIPNM
ITGAAQADVAVLVVDASRGGFEAGFEAGGQTREHALLVRSLGVTQLAVAVNKMDQVHWQQ
ERFQEITNKLGHFLKQAGFKDSDVFYIPTSGLSGENLSIRSTVSELTSWYSGLSLLEQID
AFRPPQRSVDKPFRLCVSDVFKDQGSGFCVTGKIEAGYIQTGEKLLAMPPNETCLVKGIT
LHDAPLDWAAAGDHVSLTVTGMDIIKINVGCVFCDPKEPIRVCTRFRARLLLFNFEVPIT
IGFPVLLHYGTVSEPATITKLISILHKSSGEILKKKPKCLGKGMNAVVEIQTQRPVALEL
YKDFKELGRFMLRYVGSTIAAGVVTEIKE
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgacatagaaacgtccgtggctacaactatgacgaagattttgaagatgatgac
atgtacggacagtctgtggaagatgactactgcatatcaccagcaacagcaaatcagttt
atctactctcgtcgagagaagcaagtgccgaaggaggagccccttgaggaggaagaatat
gaagaagatgtacccatgtcccccaacgttagccacaatctggacccacttgagcaggcc
aagctcttctcctgcctggaccacatgagggccgtgctgggcgactcaatgccggactcc
gtgttgaaccaggcagccatccgatgtggcttcgacgcacagagggcgctggacgtgatt
ctttccgaagaccccaaaacggcccccgacaacgccgccgtcgagaaagcgccgttaccg
cagaggagcaaacaggcggctgtgattgaaaaagctaaaagcagagacgcgtccaacaat
aaactggactgtgaagtggtacccaaagtggcccgcatgaccgtctctggcaagaagcag
accatgggctttgacgttcccagcggggacaacggcgtcacggccgccgtggcgcggcga
ggcaacagccctgaaatcaccgcggcgacactcgccgccggcgagtccacacccaaacga
cccgagacgccttcaaggggttcaaatgatgacgagctcgccggcggcgtcactcctggc
cgctctgccggaaaggcccggcaggctattgacgtgaaagccgaactggagaagcgacaa
ggaggcaaaccgttgttgaatttagtggtgatcggtcacgtggacgcggggaagagcacg
ctgatgggacacctgctctatctgctgggcaacgtcaacaagcgcaccatgcacaagtac
gaaactgagtccaagaaggcgggcaaggcgtccttcgcctacgcctgggtgcttgatgaa
accggcgaggagcgggacagaggcgtgacaatggacgtgggcatgaccaagtttgagacc
aactccaaggtggtgacgctgatggacgcccccgggcacaaagacttcatccccaacatg
atcacgggagccgcccaggcagacgtggctgtgctggtggtggacgccagtcgtgggggc
tttgaggcgggcttcgaagcgggcggccagaccagggaacacgccctgttggtgcgttcg
ctcggtgtcactcagctggcggtggcggtcaacaagatggaccaggttcattggcaacag
gaacgcttccaggaaatcacaaacaaactcggccacttcctcaagcaggcaggcttcaag
gactctgacgttttctacatccccaccagcggcctgtcgggggagaacctcagcattcgg
agtacagtgtccgagctcacctcgtggtattccggtctcagcctgctggagcagatcgat
gccttcaggcctccccagcgctctgtggacaaacctttccgactgtgcgtgtctgacgtc
tttaaagaccagggctcgggcttctgcgtcacaggcaagatcgaggccggttacatccag
actggagagaaactgctggccatgccccccaatgagacttgtctagtcaaaggaatcact
ctgcacgacgcccctttggactgggctgcagccggggaccatgttagcctgacggtaact
ggcatggacatcatcaagatcaacgtgggctgcgtgttctgcgatcccaaagagcccatc
cgagtttgcacccgattcagggcgcgactcttactctttaattttgaggttcccatcact
ataggcttcccggtcttgctgcattacggcacggtgagcgagcctgccaccatcactaaa
ctgataagcattttgcacaagagcagcggagaaatcctcaaaaagaaaccaaagtgtttg
gggaaaggcatgaacgccgtcgtggagatccagacgcagaggcccgtggcgttggagctc
tacaaggactttaaggagctgggtcgcttcatgttgcgctacgtgggctccaccatcgcg
gcaggcgtggtcactgagatcaaagaatga
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