Syngnathus scovelli (Gulf pipefish): 125990489
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Entry
125990489 CDS
T08785
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125990489
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sscv03021
]
125990489
03019 Messenger RNA biogenesis [BR:
sscv03019
]
125990489
Transcription machinery [BR:
sscv03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
125990489
Messenger RNA biogenesis [BR:
sscv03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
125990489
U7-dependent histone pre-mRNA processing factors
125990489
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B
Lactamase_B_6
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
DUF7559
Motif
Other DBs
NCBI-GeneID:
125990489
NCBI-ProteinID:
XP_049613714
LinkDB
All DBs
Position
20:10943997..10947662
Genome browser
AA seq
686 aa
AA seq
DB search
MSSKRKSDVAVPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDAL
PYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTTFKGRTFMTHATKAIYRWLLSDYVKV
SNISADDMLYTETDLEESMEKIETINFHEVREVAGIKFWCYHAGHVLGAAMFMIEIAGVK
LLYTGDFSRQEDRHLMAAEIPSVKPDILITESTYGTHIHEKREEREARFCNTVHDIVNRE
GRCLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLARKCMAVYQTYINAMNDKI
RKAINVNNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVI
IAGYCVEGTLAKHIMTEPEEISTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPH
VILVHGEQNEMARLKAALIREYEDNDQVHIEVHNPRNTEAVTLNFRGEKLAKVMGSLADK
ACTQGQRVSGILVKKNFNYHILTPADLSEYTDLNVGTVTQTQAIPYTGPISLLVSQLRCL
TGDVEQVEPADKITVRIFKNITLVHEAGMVLLEWLANPLNDMYADVVTTVVLEVQSNPNA
QKILEARRETFDQEVFVERLELMLHDMFGEDCVHFKDGDKVTVSVDGAVAHVDPETREVT
CAEDESLKDMLEVAVHRLYDALCPVA
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagcaaacgaaaaagtgatgttgcagttcccgccgaggaaagcgaccaacttctt
attcggccactcggagctggccaagaggtgggacggtcctgtatcatcttggagtttaaa
gggcgcaaaatcatgctggactgcggcatccatccaggcctggagggcatggacgcgctg
ccgtacatcgacctcatcgacccggccgagatcgacctgcttctcatcagccacttccat
ctggaccactgcggtgctctgccctggttcctgcagaagaccaccttcaagggccgtacc
ttcatgacgcacgccaccaaggccatctaccgttggctgctgtccgattacgtcaaagtc
agcaacatctcggccgacgacatgctgtacacggagacggacttagaggagagcatggag
aaaatcgagaccatcaacttccacgaggtccgggaagtggcaggaatcaagttctggtgc
taccacgccggacacgttctcggcgccgccatgtttatgatcgagatcgccggcgtcaag
ctgttgtacacaggagacttctcacgtcaggaggacagacacttgatggcggcggagatc
cccagcgtcaaaccggacatcctcatcacggagtccacgtacgggacgcacatccacgag
aagcgcgaagagcgcgaggcgcgtttctgcaacacggtccacgacattgtcaaccgagag
ggacgctgcttgattcccgtctttgcgctcggacgagcgcaggaacttctgctcatcctc
gacgagtactggcagaaccacccggagctgcacgacattcccatctactacgcgtcgtcg
ctggcccgcaagtgcatggccgtctaccagacgtacatcaacgccatgaacgataagatc
cgcaaggccatcaacgtcaacaaccctttcgtcttcaagcacatcagcaacctcaagagc
atggaccactttgacgacatcgggccgagcgtggtgatggcgtccccgggcatgatgcag
agcggtttgtctcgagaactctttgagagctggtgcaccgacaagaggaacggcgtcatc
atcgccggctactgcgtggagggcacgctcgccaagcacatcatgacggagccggaagag
atcagcaccatgtcgggacaaaagctcccgctgaagatgtcggtggactacatctccttc
tcggctcacaccgactaccagcaaaccagcgagttcatccgagcgctcaaaccgccgcac
gtgattctggtccacggcgagcagaacgagatggcccggctgaaggcggcgctcatccgc
gagtacgaggacaacgaccaggtccacatcgaagtccacaaccccagaaacacggaggcc
gtcacgctcaacttccgcggagagaaactagccaaggtgatgggctcgctggccgacaag
gcctgcactcaaggtcagagggtgtcgggcatcctggtcaaaaaaaacttcaactatcac
atcctcacgcccgccgatctctcagagtacacggatctgaacgtgggcacagtcacgcag
acgcaggccatcccgtacacgggacccatctcgctgctggtctcgcaactccgatgcctc
accggcgacgtggagcaggtggagcccgcagacaagatcaccgtacggatcttcaagaac
atcacgctggtccacgaggccggcatggttctcctggagtggctggccaacccgctcaac
gacatgtacgccgacgtggtgaccaccgtggttctggaggtccagtccaaccccaacgct
cagaagatactggaggctcggcgggaaacttttgaccaggaagtcttcgttgaaagatta
gaactcatgctgcatgatatgttcggtgaggactgcgtccatttcaaagatggcgacaaa
gtgacggtcagcgtggacggcgctgtggctcacgtggaccccgagacccgggaggtgacg
tgcgccgaggacgagtctctgaaggacatgctggaagtcgccgtccatcggctttacgac
gccctctgtcccgtcgcctga
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