Syngnathus scovelli (Gulf pipefish): 125990579
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Entry
125990579 CDS
T08785
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 3 isoform X1
KO
K11642
chromodomain-helicase-DNA-binding protein 3 [EC:5.6.2.-]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
125990579
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sscv03036
]
125990579
Chromosome and associated proteins [BR:
sscv03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
125990579
Chromatin remodeling factors
NuRD complex
125990579
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDCT2
CHDII_SANT-like
Helicase_C
CHDNT
PHD
DUF1087
Chromo
HDA2-3
ResIII
DEAD
AAA_22
HTH_23
HMG_box
PHD_2
Motif
Other DBs
NCBI-GeneID:
125990579
NCBI-ProteinID:
XP_049613865
LinkDB
All DBs
Position
Unknown
AA seq
2064 aa
AA seq
DB search
MSYPPRAFEEDDSTALHSEGGDFDEEEGGGGGGNGVGSGDLLDARSDVNSPAALRPTAAS
PEEKADTSDREVPSRKKGRPKKKKDGKKKGKEGNGARRQKEGDGAKKLDSDVERDSPPDQ
DSGDRSDSGASGSGEKRRRRRKKHKEKKEKKSKRKKSNDEDRGSAQEETARPAEQKTSAR
LAEEWGLEDVDHAFSEEDYRQLTNYKAFSQFMRPMIAKKNPKIPMSKMMTLLGAKWREFS
FNNPFKSNAAVAAAVAEQVSAAAVSPSQPPLPPPLPPPLPPPVGKAKTKEGKGPGYKKRS
KSPRVPDRKKTKAKKMAPVRLKLWPACAKRKRSCSSDDRDEEESEREDVHGSDGSGRLKK
SKRGRPAKKKKKSEEDADGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLEPELEKAP
EGRWSCPHCEKEGIQWEAKYEDFEDAEEDAEERSTSGAGSEDHHHHHHEHMEFCRVCKDG
GELLCCDTCTSSYHVRCLNPPLPDIPNGQWLCPRCTCPPIKGRVQKILHWRWGEPPPAVP
AAPDAAHDQPLLAKGRAEREFLVKLVGRSYWHCAWITELQLEIFHSVMYRNYQRKTDMDE
PPALDYGSGGEDESGAANGQKRCSKDPEYAVMEVKFYKYGIKPEWLLIHRIINHSLDKKG
AYHYLVKWRDLTYDQCTWEQDATDIPDFAVYKANYWRHRDAVTDRDPQRPRRMRSKSQEG
PDPPLPAWPVTDPTIKYEEQPDYVTSTGGTLHLYQMEGLNWLRFSWAQGTDTILADEMGL
GKTIQTIVFLYSLFKEGHTKGPFLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKDSRAV
IRENEFSFDHSLMMKGGGGGKKAFKTKRETPIKFHVLLTSYELVTIDQTALKSIDWACLV
VDEAHRLKNNQSKFFRRLNDYKIDHKLLLTGTPLQNNLEELFHLLNFLTPNRFNNLEGFL
EEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKLILT
KNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVASMEAQKTASGAYEGSALTKASGK
LTLLQKMLRKLKEQGHRVLVFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDR
FNAPGACQFCFLLSTRAGGLGINLATADTVVIFDSDWNPHNDIQAFSRAHRIGQANKVMI
YRFVTRGSVEERITQVAKRKMMLTHLVVRPGLGSKAGSMTKQELDDILKFGTEELFKDKG
EGMKSSSGDKVEDEGNVIHYDSVAVERLLDRSQDATDDSDVHNMNEYLSSFKVARYMVRE
EDKMDEMEREIIKQEENVDPDYWEKLLRHHYEQQQEDLASKLGKGKRNRKPVNYNDATQE
DQEWHADISDNQSEYSVGSEEEDEDFDDRPEGRRQSRRQLRTEKDKPLPPLLARVAGNLE
VVGFNTRQRKAFVNAVMRWGMPSQDAFSSQWLVRDLRGKSEKEFKAYVSLFMRHLCEPVA
DGAETFADGVPREGLCRQPVLTRIGVMSLVKKKIQEFEHINGRWSLPELKPDVRPDRRPS
RASSPGGAEPATLDAGYGNTACASKPATPVPTDKDDGGGGGEKDQDEGEELCAVQSVGPP
SAKTEDKRSCTEEKEDEGNGQASSALPQERNWPADKSVATTERDGKVQGGKTDGQKVDEE
RQKDTAEPEAARSQEPAQTEKEEMQSEKDAAAAAAAAAAAGKEVREVKAELAKLPVARPR
FMFNIADGGFTELHTLWQNEERAAISSGKMSDIWHRRHDYWLLAGIVVHGYARWQDIQND
PPFAIVNEPFKSQANKGNFLEMKNKFLARRFKLLEQALVIEEQLRRAAYLNMTQEPSHPA
MALNARFAEAECLAEAHRHLSEESLAGSKPANAVLHKVLNQLEELLSDMKADVTRLPATL
SRVAPIAARLQMSERSILSRLASKGTETHAPPPVPPGPYATPQHYGAPYAPGPMGGANYS
QMPPGSFISEAAWGPAGTGACQKTKEHDVVQRQRVVDLWKDGKSEGAIGLELRMPKSTVH
SIIVKYRLSNTVENLPRNGRPKKP
NT seq
6195 nt
NT seq
+upstream
nt +downstream
nt
atgtcctatccaccgcgggcctttgaggaagacgacagcacggcgcttcattccgaggga
ggagattttgacgaagaagaaggtggcggcggcggcggcaacggcgtcggcagcggagac
ttattagacgcgagaagcgacgtcaactcgccggcggcgcttcggccaactgcagccagc
ccagaggaaaaagcggacacgtctgacagggaggtcccgagtcgaaagaaaggacgtcca
aagaaaaagaaggatggcaagaagaaggggaaagagggcaacggcgccaggcggcaaaag
gagggcgacggcgccaagaagctcgacagcgacgtagagcgggactcgccgccggaccag
gactcgggcgaccgctcggacagcggcgccagcggctctggcgagaaaaggaggaggagg
aggaagaagcacaaagaaaagaaggagaagaaaagcaagaggaagaaaagcaatgacgag
gaccgaggcagcgctcaagaggagaccgcccggcccgccgagcagaagacctccgcccgg
ctggccgaggagtggggcctggaggacgtggatcacgccttcagcgaggaggactacagg
cagctcaccaactacaaggccttcagtcagtttatgaggcccatgatcgccaagaagaac
cccaagattcccatgtccaagatgatgactctcctgggggccaaatggcgggagttcagt
ttcaataaccccttcaaaagcaacgccgccgtggccgccgccgtcgccgagcaggtctcc
gcggccgccgtctcgccgtcgcagccgccactgccgccgccactgccgccaccactgccg
ccgcctgtcggcaaggctaagaccaaagaaggcaaagggccaggctacaagaagcgcagc
aaaagtcctcgagtccccgacaggaaaaaaacgaaggccaaaaagatggcgcccgtccgg
ctcaaactttggccggcgtgtgccaagaggaagaggagctgctcgagcgacgaccgggac
gaagaggagtcggagcgggaagacgtccacggctcggacggctcgggacgcctcaaaaag
agcaagcgcgggcggccggccaagaagaagaagaaaagtgaggaagacgccgacggttac
gagacggaccaccaggactactgcgaggtgtgccagcaaggcggcgagatcatcctgtgc
gacacctgcccgcgagcctaccacctggtgtgcttagagcccgagctggagaaggctccc
gagggcaggtggagctgccctcactgcgaaaaagaaggcatccagtgggaggccaaatac
gaagactttgaggacgcggaggaggacgcggaggagaggagcacgtcgggggcggggtcg
gaggaccaccaccaccaccaccacgagcacatggagttctgccgggtgtgtaaagacgga
ggcgagctgctgtgctgcgacacctgcacctcctcctaccacgtccgctgcctgaacccg
ccactgcccgacatccccaacggacagtggttgtgtccgcgatgcacgtgcccacccatc
aaaggacgcgtgcaaaagatcctccactggcggtggggggagcccccgcctgcggtcccc
gcggcgccggacgcagcgcacgaccagccgctactggcaaagggccgagccgagcgggag
ttcttggtcaagctggtcggacggtcctactggcactgcgcctggatcactgagctgcag
ttggagatcttccactcggtgatgtaccgaaactaccagaggaagacggacatggacgag
ccgcccgctttggactacggctccggcggcgaggacgagagcggggcggccaacggccag
aagcggtgctccaaggaccccgagtacgccgtcatggaagtcaagttctacaaatacggc
atcaagcctgagtggctgctgatccatcgcatcatcaaccacagtctggacaaaaagggc
gcgtaccactacctggtcaagtggagagacctgacctacgaccagtgcacctgggagcaa
gacgccacggacatccccgactttgccgtctacaaagccaactactggagacacagggac
gccgtcactgaccgagacccccagcggcctcgcaggatgaggagcaagagtcaagagggc
ccagacccgcctttgcccgcttggcccgtcaccgacccgaccatcaaatacgaggagcag
cccgactatgtgacgtcgacgggcggcacgctgcatctctaccagatggagggtctgaac
tggcttcgcttttcctgggctcagggcaccgataccatcctggccgacgagatgggtctg
ggcaagaccatccagaccatcgtcttcctctattcgctcttcaaagagggtcacaccaag
ggtccgttcctggtcagcgccccgctctccaccatcatcaattgggagcgcgagtttgag
atgtgggcgcccgacttctacgtggtcacctacacgggcgacaaggacagccgagccgtc
atccgggaaaacgagttctcctttgaccactcgctgatgatgaaaggcggcggcggcggc
aagaaggccttcaagacgaagagagagacgccgatcaagttccacgtgctgctgacctcc
tacgagctagtgaccatcgaccagacggcgctcaagtccatcgactgggcctgcctggtg
gtggacgaggctcaccgtttgaagaataatcagtccaagtttttccggcgcctgaacgac
tacaagattgaccacaagctgctgctgacgggaacgccgctccagaacaacctggaggag
cttttccacctgctcaatttcctcacacccaaccgcttcaacaacctggaaggcttcctg
gaggagtttgccgacatctccaaggaggaccagatcaagaaactgcacgacctgctgggg
cctcacatgctgcggcggctcaaggccgacgtcttcaagaacatgcccgccaagaccgag
ctgattgtgcgagtggagctcagccccatgcagaaaaagtactacaagctgattctaacc
aagaactttgaggctctgaactcaaaaggcggagggaaccaggtctccctgctgaacatc
atgatggacctgaagaagtgctgcaaccatccctacctcttccccgtggcctccatggag
gcccagaaaacggccagcggcgcttacgagggctcggcgctcaccaaggcttccgggaaa
ctgacgctgttgcagaagatgctgcgcaagctgaaggagcagggacaccgagtgctggtc
ttctcgcagatgaccaaaatgctggacttgctggaggacttcctggattacgaaggctac
aagtacgagaggatcgacggcggcatcaccggggcgctcaggcaggaagccattgaccgc
ttcaatgctcccggcgcttgtcagttttgcttcctgctctccacccgagccggaggcctg
ggcatcaacttggccacggccgacaccgtcgtcatctttgactcggactggaacccccac
aatgacattcaggccttcagtcgggctcaccgcatcgggcaggccaacaaggtgatgatc
taccgctttgtgacgcgaggcagcgtggaggagcgcatcacgcaggtggccaagaggaag
atgatgctgacccatctggtggtccggcccggcctgggctccaaagccggctccatgacc
aagcaggaactggacgacatcctcaagtttggaaccgaggagctcttcaaagacaaggga
gaaggtatgaagagctcgtcgggggataaagttgaagacgagggcaacgtgatccactac
gacagcgttgccgtcgagaggctgctggaccgaagccaggacgccaccgacgactcggac
gtccacaacatgaacgagtacctgagctccttcaaagtggcccgctacatggtccgagag
gaggacaagatggacgagatggagcgagagatcatcaagcaggaggagaacgtagatccg
gactactgggagaagctgttgcgccaccactacgagcagcagcaggaggacctggccagc
aaactgggcaaaggcaagcgcaaccgcaagcccgtcaactacaacgacgccacgcaggaa
gaccaggagtggcacgctgacatttccgacaaccagtccgagtattccgtgggctccgag
gaggaggacgaggactttgacgaccgtcccgaaggccggagacaatcccgccgccagttg
aggaccgagaaggacaaaccgctccctcctcttctggccagagtggccggcaacttggag
gttgtgggcttcaacacacgccagcggaaggcttttgtcaacgcggtgatgcgctggggg
atgccatctcaggacgccttctcctctcagtggctggtcagagacctccgaggcaagagc
gagaaggaattcaaggcgtacgtgtcgctcttcatgcgtcatttgtgcgagccggtggcc
gacggggccgagacgttcgccgacggcgtccccagggaaggcctgtgtcgacagccggtc
ctcacgcgcatcggcgtcatgtcgctcgtcaagaagaagattcaggaatttgagcacatc
aacgggcgctggagtcttccggagctcaaacccgacgtcagaccggacagacgcccctcc
agggcgtcgtcccccggcggcgccgaaccagccaccctcgacgccggctacggcaacacg
gcgtgcgcctccaagccagcgacgcccgtgccgacggacaaggacgacggcggcggcggc
ggcgagaaggaccaggatgaaggggaagagctttgcgcagtgcaaagcgtgggtcccccc
agtgccaaaacagaggacaagcgttcatgtacggaggagaaagaagacgaggggaacggg
caagcgagcagcgccttgccgcaggagaggaattggccagcagacaagagcgttgcaaca
accgagcgtgacgggaaggtgcaaggtggcaaaacggatggccaaaaggtggatgaggag
cggcaaaaagacacggccgagccggaagcggcccggtcccaggagcccgcccaaaccgag
aaagaggagatgcaaagtgagaaggacgctgccgctgctgccgccgccgccgccgctgct
ggcaaagaagtgcgagaggtgaaggcggagctggctaagctgcctgtggcgcgacctcgc
ttcatgtttaacattgctgacggcggctttactgagttgcacactctttggcagaacgaa
gagcgggccgctatctcctcgggaaagatgagcgatatctggcaccgccgccacgattac
tggctcctggcaggaatcgtcgtccacggctacgctcggtggcaggacatccaaaacgat
ccgccgttcgccatcgtcaacgagccctttaagtcgcaggccaacaaaggcaacttcctg
gaaatgaagaacaagttcctggctcgccgcttcaagctgctggagcaggcgctggtcatc
gaggagcagctgcggcgggcggcctacctgaacatgacgcaggagcccagccacccggcc
atggcgctcaacgcgcgcttcgccgaggcggagtgcctggccgaggcgcaccggcacctc
agcgaggagtcgctggcgggcagcaagccggccaacgccgtcctgcacaaagtgctcaac
cagctggaggagctgctgagcgacatgaaggccgacgtgacccggctgccggccacgctg
tcccgagtggcgcccatcgccgcgcgcctgcaaatgtcggagaggagcatcctcagccgg
ctggccagcaagggcacggagacgcacgcgcccccgcctgtccctcccggaccctacgcc
acccctcagcactacggcgccccctatgctccggggccaatgggcggggccaactacagt
cagatgccgcccggctccttcatatcagaagctgcttgggggccggccggcaccggcgcg
tgccagaagaccaaggagcacgatgtggtgcagcgccagcgggtggtggacctgtggaag
gacggcaagtcggagggggccatcggcctggagctgcgcatgcccaagtccacggtgcac
agcatcatcgtcaagtatcgcctcagtaacacggtggagaacctgccgcgcaacggtcgc
cccaaaaaaccctga
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integrated database retrieval system
