Syngnathus scovelli (Gulf pipefish): 125990688
Help
Entry
125990688 CDS
T08785
Symbol
taf1a
Name
(RefSeq) TATA box-binding protein-associated factor RNA polymerase I subunit A isoform X1
KO
K15212
TATA box-binding protein-associated factor RNA polymerase I subunit A
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sscv03021
]
125990688 (taf1a)
Transcription machinery [BR:
sscv03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
125990688 (taf1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF1_subA
YozE_SAM_like
COG4_N
Motif
Other DBs
NCBI-GeneID:
125990688
NCBI-ProteinID:
XP_049614073
LinkDB
All DBs
Position
20:3684648..3691342
Genome browser
AA seq
465 aa
AA seq
DB search
MDDLENELWYPVQSPVLFDEHNDSSEYNVTKKQKKSKLPLAEAFVVETAKETGFHRTTRL
CLERIREAMLHHRWQEAAEYMACYPQQLEDTTAGPGKHYKEMIWRITIEILHHHPNSKME
DYNIIYEQMKHSGFKHYLMICLEHSFHLLLHGQIENANRHLSIAESWRHGQETAHQYQRS
KLIQAYSGLLDYIIWCNKKNAPTKTSSTNAGSNQDMHYDFRQASVNLKEILKYPGVWDPF
ILSYVEMLEFYDAHDEAKKVLEEYAYDSTFPSNPNAHVYLYQYLQRHNAQARKLMKVLKV
LHHLVPSHELMLDYSSFLLLSEKPGDIKKALGVLLDILDYACWRTSMDAWKCLKDVIDKL
QLQDDWKEVVAEQMTARKEWWPAMHFTMFHASEDAVQRPQLMEVKASLTKILCPVPPHLL
DIEVQKKTQDSSLYSRVLLGSTQQQFVLRVLLGSTQWMCTLKSRL
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atggacgatctggaaaatgagctttggtatcccgtacagtctcctgtactgtttgacgag
cacaacgattcatcagagtacaatgtgacaaaaaagcagaaaaaatcaaagcttccactg
gcagaggcatttgttgttgagacagcgaaggaaacagggttccatcggaccacaaggctt
tgtctcgagagaatcagagaggcgatgctgcatcacagatggcaggaggctgcagaatat
atggcttgttacccccaacagttggaggacacaactgctggccctggaaagcactacaaa
gagatgatttggagaattactattgaaatccttcatcatcaccctaactcaaagatggag
gactataatataatttatgagcaaatgaaacattcaggattcaaacattacctgatgatc
tgcttggaacattccttccacctgcttctccatggtcaaattgagaatgcaaaccgtcac
ctctccatcgctgaaagttggaggcatggtcaagagactgcacatcagtatcagaggagt
aaattgatccaggcctacagtggtttgctggattacataatctggtgcaacaagaaaaat
gcacccaccaagacgagttcgacaaacgctggaagcaaccaagacatgcactatgacttt
agacaggcttctgtcaatctgaaggagattttaaaatatcctggtgtttgggatcccttc
atactgagttacgtcgagatgcttgaattctatgacgctcatgatgaagccaagaaagtc
ttggaagagtatgcatatgacagcacgttcccttcaaatccaaacgcacatgtctatctt
taccagtacttgcagagacacaatgcacaagcgagaaaattgatgaaagttttaaaggtc
ctccatcatttagttccaagccatgagctgatgttagactacagttccttcctgcttctc
tcagagaaaccaggagacataaagaaggctcttggggttctccttgacatacttgactat
gcctgctggaggacgagcatggatgcgtggaagtgtttaaaagacgttattgacaaatta
cagttacaggacgactggaaggaggttgttgctgagcagatgacagcgagaaaagagtgg
tggcccgcaatgcacttcacaatgttccacgcaagtgaggatgccgtgcaaagaccccaa
ctgatggaagtgaaggcatcactcaccaagatcctctgtccagttccacctcatcttctt
gacatagaagtacaaaaaaaaacacaagacagcagtttgtactcaagagtcttgcttggc
tcgacccagcagcagtttgtactcagagtcttgcttggctcgacccagtggatgtgtacc
ctcaaatccagactgtga
DBGET
integrated database retrieval system
