Syngnathus scovelli (Gulf pipefish): 125990846
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Entry
125990846 CDS
T08785
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
125990846 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sscv03021
]
125990846 (polr1a)
Enzymes [BR:
sscv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
125990846 (polr1a)
Transcription machinery [BR:
sscv03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
125990846 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Nop14
TssR_VWA
Motif
Other DBs
NCBI-GeneID:
125990846
NCBI-ProteinID:
XP_049614105
LinkDB
All DBs
Position
1:21215098..21228560
Genome browser
AA seq
1696 aa
AA seq
DB search
MLFRKDVPWRRLEGMSFGMYSAEEIRKLSVKTITNTRLLDGVGNVLPNGLYDLALGPSDN
KEVCSTCHQDFNNCPGHLGHVELPLPVYNPLFFDKLYLLIRGSCLTCQMLTCPRAAIHLL
LNQLKLLDHGAIQQVYQIEEFLNQFIEKNGKVTGDDIAAALKEFTDSVVTESSGNINQIK
HIVGRKDTLINDFWRNHMKSRNCPHCRSKRFPLRREHNSKLIVTLPAGTQSILKCDVVDI
TAGDKAYMTASTAREHVNMLWKKEGFFLKCLFYGVENNSASNGAEEGFSPDLFFLELMVV
PPCRYRPTNRLGDQMFTNGQTVNMQAVMKDCAIVRKLLSLMAVEKGTQEAESQDTEEKDR
SFLSEIPGKTLTDKLYNIWIHLQTHINIVFDSDMDKMMSQKYPGIKQILEKKEGLFRKHM
MGKRVDFAARSVICPDMYIGTNEIGLPMVFATKLTYPQPVTPWNVKELRQAVLNGPNVHP
GATMVMSEDGRRTLLSPSSFTQREAVAKQLLTPCPGPHKMPMKIVNRHIKNGDVLLLNRQ
PTLHRPSIQAHRARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQTELGRAEAYTLVS
TDQQYLLPKDGTPLAGLIQDHMVSGARMTIRGSFFTRDQYTELVYRGLTDKQGRVKLLRP
AILKPQKLWTGKQVVSTLLLNVIPKKAVPLNLVGKSKIPSKTWIQIPPRATPGYDPDTMC
DSQVLIRQGELLVGVLDKAHYGSSAYGLVHCCYELYGGETSGNLLSCLARLFTAYLQLYR
GFTLGVEDILVKPGANKKRKRIIKESLKIGTRALQTAFNLPPDVDEAEAKSRWQDAHLNP
DQRDFSMADHKFKEVANQVNNDINKVCMPIGLHTSFPDNNLQLMVQSGAKGSTVNTMQIS
CLLGQIELEGRRPPLMPSGKSLPCFQPYDPAPVAGGFVTGRFLTGIRPQEFFFHCMAGRE
GLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTKFLQ
PRQFPFIEDNFEVIRKSQGLDKVLARVDPQGANKHFSAIQRWKSKRGLACPRKGAFLLFS
QKKLAQLKQTEQDAGRNVCGRDAAVLKLIEQWRALGEDGQSKYKKKSSRCPDPSLAMFRP
DISFGSVSESFHGITEKYLQNRDTMSPQGLDADRLRPLLHYKWQRSLCDPGEAVGLLAAQ
SIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASSNIKTPMMSVPVLNSKKALKR
AQKLRRQLTRVCLAEVLQKIDVVETLRMESLPRSRMQTYKITFNFLHPEHYAEDKQLSPH
KILHYMETRFFHLLLQAIDKRVAKLTSIAVGTQKATLRDKDIDGDELAEPPGGDDGEDVA
EREVVDDQANEGDADASDAKRRDKQEEEVDYDSAEENEDKDDVEEEEEAQEEEEEETQKE
AQEEAEGGAKQSKMESTDAKKNQAKSGGVEESPDQMRVKFVLNSNPAIEGYRYDLKHELW
CELEVAFPVSKVYLDMTSVVSKLAQNAIIVETKGLTRCLLNETTTKTGEKLMVLNTEGIN
MHKIFEHSDILDVNRLYSNEVHAMAQTYGIEVAFKVIEKEIKDVFAVYGIQVDPRHLSLV
ADYMCFEGVYKPLNRHAFKSNPSPLQQMTFETSFKFLKQATMLGASDQLVSPSACLVVGK
VVKGGTGLFELKQPLQ
NT seq
5091 nt
NT seq
+upstream
nt +downstream
nt
atgctgtttagaaaagacgtgccatggcggcgattggagggcatgtcgtttggcatgtac
tctgccgaagagatacggaagttgagtgtaaaaacgatcaccaacacgaggttgcttgat
ggagtcgggaatgtgctcccaaatggcctctatgacttggccctgggaccatcagacaac
aaggaggtatgctcaacttgccaccaggacttcaacaactgtccaggacacctgggacac
gtagagctaccacttcctgtgtacaaccctttatttttcgataaactctacctgttgatc
cgtggttcatgtttgacgtgccaaatgttaacatgtccacgggcagccatccacctgcta
ttgaaccaactcaagttactggaccatggagccatacagcaagtttaccagatagaggaa
tttctcaaccagtttatagagaagaacggcaaagtcactggtgacgatattgcagcagcg
ttgaaagagttcaccgattcagtcgtaactgaaagctcaggaaacatcaaccagataaaa
cacattgttggaagaaaagacactttgataaatgatttctggagaaatcacatgaaatct
cggaattgtccccactgcaggagcaagcgcttccccctccgaagggagcacaacagcaag
ctgatcgtcacattgcccgctggcacgcaaagcattctcaaatgtgatgtagtggacatt
acggctggagacaaagcctacatgactgccagcacagctagagaacacgtcaacatgctg
tggaagaaagaaggtttcttcctgaagtgtctgttttatggggttgagaacaactctgcg
tcaaacggagcggaagaaggtttctctccagatctcttcttcctggagttgatggtggtc
ccgccatgcaggtaccgtccaactaatcgactgggtgaccagatgtttaccaacggtcag
acggtcaacatgcaagcagtgatgaaggactgtgcaattgtaagaaaactgctttctctc
atggctgttgagaaaggtactcaggaggctgagtctcaggatactgaagagaaagacagg
tcttttctctcagagattcctggaaagacattaacagataaactctacaacatatggatt
caccttcagacacacatcaacattgtctttgacagtgacatggacaaaatgatgtctcaa
aagtacccaggaatcaaacagattctggagaaaaaggagggattgttccgtaaacacatg
atgggcaaaagagttgattttgcagctcgatctgtcatctgtccagacatgtacattgga
accaatgagataggacttcccatggtgtttgccacaaaactaacctacccgcagcctgtc
acgccttggaatgtgaaggagcttcgccaggccgtcctgaatggcccaaacgtccatccc
ggtgcgacgatggtgatgagtgaggacggcaggagaaccctcttgtcaccgagcagcttt
acacaaagagaagcggttgccaagcagctgttgacgccctgtccgggtccacacaagatg
ccaatgaaaattgtgaaccgccatattaagaacggagatgttctgttgttgaaccgacag
cctaccttgcaccgaccgtcaatacaggctcaccgtgcacgcattttgcctggagagaag
gttctgaggctccactacgccaactgcaaagcttacaatgcagattttgatggagatgag
atgaatgctcacttcccacagactgagctcggtcgagctgaggcctacacgttagtcagc
accgaccaacagtatcttttgccaaaggatgggacacctttggctggtctgattcaggat
cacatggtttcaggtgcacgcatgacaattcgaggcagtttcttcaccagagatcagtac
accgaacttgtgtacagaggactgactgacaaacaagggcgagttaaacttctccgaccc
gcaatactcaagccacagaaactctggacaggaaagcaggtggtgtccacactcctcctc
aatgttattccaaaaaaggccgtaccgttaaatctggttggaaaatcaaaaatccccagc
aaaacatggatccaaattcccccacgagcgactcctggatatgaccctgacaccatgtgt
gactcacaggtgctgatccgtcagggtgagttgttagtgggggttctggacaaagctcac
tacggctcctctgcatacggtctggtccattgttgctacgaactttacggaggggagacc
agcggcaatctgctcagctgtctggccagactctttactgcttacctgcagttatataga
ggattcactctaggtgttgaggacattctggtgaaaccaggtgccaataaaaagaggaaa
aggattatcaaagaatcactgaaaattggcacaagagccctccagacagcattcaacctt
ccccccgacgtggacgaagcagaggctaagagccgttggcaggatgctcatctcaatccg
gaccagcgagattttagcatggctgaccacaaattcaaagaagtggccaaccaagtcaac
aatgacattaacaaggtgtgtatgccaattggccttcacacctccttcccagacaacaac
ctccaactgatggtccagtcaggtgccaagggttccaccgtcaacaccatgcagatctcg
tgtctactaggtcagattgaattagagggtcgtaggcctccactgatgccctctgggaaa
tcgctgccttgtttccaaccatatgacccagcgcccgttgctggaggttttgttactggg
aggttcctcacaggcatcagaccacaggaatttttcttccattgcatggcaggcagagaa
ggactggtggatactgctgtaaaaacatctagatcaggatacttgcagaggtgtattata
aagcatctggagggtttggtggtgcagtatgatctgacagtgagggacagtgatggatct
gtagtccagttcttgtatggtgaagatgggcttgatatccctaagacgaagttcctgcag
ccgaggcagtttcccttcattgaggacaactttgaggtaataagaaagtcgcagggcttg
gacaaggtgttggcacgagtggaccctcaaggtgccaataaacatttttcagccatacaa
cgctggaaatcaaaaagagggttggcttgtcctcgcaaaggagcatttctattgttttcc
caaaagaagctggctcaactgaagcagaccgaacaagatgccggacgaaatgtgtgcggg
agggatgcggctgttctaaaactgatagaacagtggcgtgctctaggtgaagatgggcaa
tcaaaatacaaaaagaagtcctcccgctgccctgaccccagcctggctatgtttaggcct
gatataagctttggatctgtttctgaaagctttcacggcatcaccgagaaatacttgcaa
aatcgagacacgatgagtccacagggcttggatgctgacagacttcgaccactgttgcat
tacaagtggcaacggtcactatgtgatccaggggaagcggtgggtctgctggcagctcag
tccattggcgaaccctccacccaaatgaccctcaacaccttccactttgctggcagagga
gagatgaatgtcacactgggaatacctcgactgagagagatcctgatggtggccagctcc
aacatcaagactcctatgatgagtgttccggtgttgaacagcaagaaggccttaaaaaga
gctcagaaactccgcagacaacttacaagggtctgcttggccgaggtactgcagaaaatc
gatgtggtcgagacactacgtatggagagcctccctcggtcgaggatgcagacttataaa
atcactttcaactttcttcatcctgagcattatgctgaagacaaacagctctcaccccac
aagatcctccactacatggaaactagattttttcacctcttgcttcaagccattgacaaa
cgtgttgccaagctgacttccattgctgtggggacccagaaggccaccctcagagacaaa
gacattgatggtgatgaattggctgagccaccagggggggatgatggggaggacgtggcg
gagagagaagtagttgatgaccaagcgaatgaaggtgacgctgacgcatcagatgccaag
aggagagacaagcaagaagaggaagtcgattatgacagcgcggaggaaaatgaggataag
gatgatgtggaggaggaagaggaggcgcaggaggaagaggaagaggagacgcaaaaggaa
gcacaagaggaagcggagggtggtgccaaacaatccaaaatggagtcgacagacgcgaaa
aagaatcaagcgaaaagtggaggagtagaagagtctcccgatcagatgagggtgaaattt
gtcctgaattccaacccagcaatagagggctatcgctatgacctcaagcacgaactgtgg
tgtgaattggaagtggctttcccagtgagcaaagtgtaccttgacatgacgtcagtcgtg
tcaaaactagcccaaaacgccatcatcgtggaaaccaagggcctgacccgatgcttgctg
aatgagaccacaaccaagactggagaaaaactgatggttcttaacactgagggcatcaac
atgcacaaaatcttcgagcacagcgatatcctggatgtcaacaggctctattccaacgag
gtccatgccatggcacaaacctacgggatcgaagtagctttcaaagtcatagagaaagaa
atcaaagatgtctttgcagtttatggtatccaggtggaccccagacatttgtcactcgtg
gcagactacatgtgttttgagggggtctataaaccactgaaccgccatgccttcaagtcc
aatccctccccactgcagcagatgacttttgagaccagcttcaaattcctcaaacaggct
accatgctgggcgcaagtgatcaactggtatcgccatcagcctgcctggtggtggggaag
gttgtcaaaggaggaacaggactttttgagctcaaacaaccgctgcagtag
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integrated database retrieval system
