Syngnathus scovelli (Gulf pipefish): 125990887
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Entry
125990887 CDS
T08785
Name
(RefSeq) endothelial PAS domain-containing protein 1 isoform X1
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04137
Mitophagy - animal
sscv04140
Autophagy - animal
sscv04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
125990887
04137 Mitophagy - animal
125990887
04148 Efferocytosis
125990887
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sscv03000
]
125990887
Transcription factors [BR:
sscv03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
125990887
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAS_11
PAS_3
bHLH_HIF1A
PAS
PAS_9
HLH
DUF2789
Motif
Other DBs
NCBI-GeneID:
125990887
NCBI-ProteinID:
XP_049614172
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All DBs
Position
21:8415027..8418301
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AA seq
342 aa
AA seq
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MRADKERRRAISREAARRRRRVESDIFGDLCRLLPLQASIRDHLDKPSVIRLALCYIRLK
TLLQNNLYLSQFLDLNGTTKAAEETDIYLTIMEGFVMVLSLEGDMMFLSDNVSCYLGLTA
TELMGHNIFEFTHPYDHKEIKSNLHLTEEEFWSDAKRDFVVRIKSTLSLRGQNTNIKSAT
WKVLQCQGRARTCAGPFLASCLLLTCRPLPVSHTLLCARTFSSQHSMDMRFTQCDHSVLS
ILGYTSHELVGRSIYELCHTLDTICLTKYHVDLYSKSQSVSSRYRMLVKGGGYVWVESHS
AVVPRVRTSKSRSGAPQHLMVLCVTYVLSDVEEPFLQLSVDQ
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atgagagctgacaaggagaggagaagggcgatcagtcgcgaggcagccaggcggaggcgg
cgagtggagtcggacatttttggcgatttgtgccgcctgctaccgttacaagcgtccatc
agagatcacctggataaaccgtccgtcatccgtctggcgctctgctacattcgactcaaa
acgctgctacaaaacaacttgtacctgtcacagtttttggatttgaatggcacgacaaag
gctgcagaggagactgatatctacctaaccatcatggagggatttgtgatggtcctgtcc
ctcgagggggacatgatgttcctgtccgacaacgtcagctgctacctaggactcacggcg
actgaactgatgggccacaacattttcgagtttactcacccgtatgaccacaaagaaatc
aaaagtaatctccacctaactgaagaggagttttggagcgacgcaaaacgggactttgtg
gtgaggattaaaagcaccctaagcctccgaggacagaacaccaacatcaagtcggccacg
tggaaggtgctgcagtgccagggccgagcgagaacttgcgccggccccttcctggcctcc
tgccttctgctcacctgtcgtcctctgcccgtgtctcacacgctcctctgcgctcgcacc
ttcagcagtcagcacagcatggacatgaggttcacgcagtgcgaccacagcgtgttgtca
attttaggatacacttctcacgagctggtgggccgctccatatatgagctttgtcacacg
ctggacacgatctgtttgaccaaatatcacgtcgacttgtactcaaagagccagtcagtc
agcagccgctacaggatgctagtgaagggcggcgggtatgtgtgggtggaaagccacagc
gccgtggtaccgagggtccggacgtccaagtccagaagcggagccccacagcatcttatg
gtcctctgcgtcacctacgtgctaagcgacgtggaggagccgttcctgcagctctccgtg
gaccaatga
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