Syngnathus scovelli (Gulf pipefish): 125990896
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Entry
125990896 CDS
T08785
Name
(RefSeq) RNA-binding protein with serine-rich domain 1-A isoform X1
KO
K14325
RNA-binding protein with serine-rich domain 1
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03013
Nucleocytoplasmic transport
sscv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
125990896
03015 mRNA surveillance pathway
125990896
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sscv03019
]
125990896
Messenger RNA biogenesis [BR:
sscv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
125990896
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM_2
RAP1
RRM_3
DUF5363
RRM_5
PI3K_1B_p101
Macoilin
Motif
Other DBs
NCBI-GeneID:
125990896
NCBI-ProteinID:
XP_049614196
LinkDB
All DBs
Position
21:complement(4657116..4660303)
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AA seq
296 aa
AA seq
DB search
MICWLLLLGHFLPASCETCVPSPIKKEDDKGKQKDKRKSTASKDVAEKDQGKVKSQTRRG
ASSGSSSSSSSSGSGSSSSSSTSSSGSSSSRSSSSSSSSPSPNRQRQNRRRSPSKSKVVK
KDDRDRDRRRRSPASKPTKVYLGRLTRNVIKVTQNRYAWRLGVREHVQEIFSTYGKIKMI
DMPMNRIHPHLSKGYAYIEFETPEEAEKALKHMDGGQIDGQEITVIAVLTPTVRPPPRRI
SPPRRMPPPPPMWRRSPPRMRRRSPRSPRRRSPVRRRSRSPDRRRHQSRSSSNSSR
NT seq
891 nt
NT seq
+upstream
nt +downstream
nt
atgatttgctggttgcttcttcttgggcatttcctgccggcttcgtgtgagacatgtgtg
ccttcgccaatcaaaaaggaggatgacaagggtaagcaaaaagataaacggaaatcaaca
gcctcaaaagatgtggctgaaaaagatcagggcaaagtgaagagccaaacacgccgcggt
gcttcaagtgggagcagcagttcaagttctagtagcggctcgggttcaagttccagctca
tccacaagctcctccggttcttcgagctcccgctcatcctcatcatcgtcgtcctcgcca
agccccaaccgacaacgacaaaacagacggcgctccccctcaaagtccaaagtggtcaag
aaagacgatcgggatcgggaccggcgacggagaagtcctgcttcaaaacctaccaaggtc
tacctgggccggctgacaagaaatgtcatcaaggttactcaaaacagatatgcatggaga
ttaggagtcagggaacatgtccaggagattttctccacttacggcaagatcaagatgatt
gacatgcccatgaaccggattcaccctcatctgtctaagggctacgcctacatcgagttt
gagacccctgaggaagcggagaaggcactcaaacacatggatggagggcagattgacggt
caggagattacagtcatagccgtcctgactcctacagtgcggcccccacctcggaggatt
tcgcctccccgcagaatgccgcctccaccgccgatgtggcgacgttctccgcctcgaatg
aggaggaggtctccccggtcgccaaggcgacgctctccagtgcggcgtaggtctcgatca
cctgaccgccgtcgccaccagtcccggtccagttccaactcctcccgctaa
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