Syngnathus scovelli (Gulf pipefish): 125991019
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Entry
125991019 CDS
T08785
Name
(RefSeq) WD repeat domain phosphoinositide-interacting protein 1
KO
K17908
autophagy-related protein 18
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04136
Autophagy - other
sscv04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
125991019
04136 Autophagy - other
125991019
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sscv04131
]
125991019
03029 Mitochondrial biogenesis [BR:
sscv03029
]
125991019
Membrane trafficking [BR:
sscv04131
]
Autophagy
Autophagosome formation proteins
Atg18-Atg2 complex
125991019
Mitochondrial biogenesis [BR:
sscv03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
125991019
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROPPIN
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_Prp19
WD40_WDHD1_1st
WD40
WD40_MABP1-WDR62_2nd
WDR55
ANAPC4_WD40
Beta-prop_IFT140_1st
Beta-prop_EML
Beta-prop_WDR19_1st
Beta-prop_RSE1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_Vps41
Beta-prop_NWD2_C
CPSF_A
Beta-prop_WDR19_2nd
BCAS3_WD40
EIF3I
Beta-prop_WDR35_TULP_N
RMC1_N
Motif
Other DBs
NCBI-GeneID:
125991019
NCBI-ProteinID:
XP_049614461
LinkDB
All DBs
Position
21:5460817..5464863
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AA seq
441 aa
AA seq
DB search
MDLQDEGDGGPEMLRGFICASFNQDTTSLSVGTKTGYRLFSVTAVDKLDCIHEGVECPDV
CIVERLFSSSLVVVVSQSMPRRMNVYHFKKGTEICNYSYTNNILSVRLNRQRLVVCLEES
IYIHNIKDMKLLKTLLNTPTNPSGLCALSVNHGNSFLAYPGSATIGEITVYDANNLSTVT
LIQAHASPLAALTFNTSGTKLASASEKGTVIRVFSIPEGQRLFEFRRGMKRYVSISSLSF
SADAQFLCASSNTETVHIFKLEQHSPSHEEESPTWSAYVGKMFTAASTYLPAQVSDMMHQ
DRAFATVRLNMCGLKNICALATIQKLPRLLVASSDGHLYIYNVDPQDGGECTLVQKHSLF
DDSEEQVEQKEEETPAEVSNQPAGQSYAATVGLPSSPPCSATLLGYSEEGGAQKGDVIPE
HEFAESPVRLDDENEFPPVSN
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atggatttgcaagacgaaggggacggcggccccgagatgctccgaggcttcatctgtgcc
tcgtttaaccaggacaccacctccttgtcagtaggcaccaaaaccggctaccgtctcttc
tctgtcaccgctgtggacaaactggactgcatccatgagggagtggagtgtcccgacgtt
tgcatcgtggaacggctgttctccagcagcttggtggtagtggtgagccaatccatgcca
cggcggatgaacgtctatcacttcaagaaaggtaccgaaatctgcaactacagctacacc
aacaacatcctctccgtcaggctcaacaggcagcgactggtggtttgcctggaggagtcc
atttacatccacaatatcaaagacatgaaacttctcaagactctgctcaacacgcccaca
aacccgtcaggtctctgcgccctttccgttaatcacggcaactctttcttggcatacccc
ggtagcgccacgattggcgagatcacagtgtatgatgcaaacaatctgagcaccgtgacg
ctgatccaagcccacgccagtcctctggcggcgctcaccttcaacacctccggcaccaaa
ctagctagcgcctcggagaagggcaccgttatcagggtgttcagtattcccgaaggacag
aggctgtttgaattccggcgagggatgaaaagatatgttagtatcagttcgctgtccttc
agcgccgatgctcagttcctgtgtgcctccagcaacactgagacagttcacatcttcaaa
ctggaacagcacagccccagtcatgaggaggagtctcccacatggtctgcgtacgtgggc
aaaatgttcacagccgcaagcacctacttgccggctcaggtgtccgacatgatgcatcag
gaccgggccttcgccaccgtgcggctcaacatgtgcggcctgaagaacatctgcgcgctg
gctacgattcagaagctgcctcgcctgctcgtggcgtcctcggacggccatctttatatc
tataatgtcgatccacaagatggaggcgaatgtacgctggtgcaaaaacacagcttgttt
gatgacagcgaggagcaggtggaacaaaaggaagaggagacgcccgcagaggtctccaac
caaccggccggccaatcgtacgcagccaccgtgggactaccctccagcccgccctgctct
gccacactcttgggatactccgaggaagggggagcccagaagggagacgtcatcccagag
cacgagttcgccgagagccccgtgcgtctggatgatgaaaatgaatttcctccagtcagt
aactag
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