Syngnathus scovelli (Gulf pipefish): 125991046
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Entry
125991046 CDS
T08785
Symbol
fmr1
Name
(RefSeq) fragile X messenger ribonucleoprotein 1 isoform X1
KO
K15516
fragile X mental retardation protein
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sscv03019
]
125991046 (fmr1)
Messenger RNA biogenesis [BR:
sscv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
125991046 (fmr1)
Factors involved in mRNA localization
Other mRNA localization factors
125991046 (fmr1)
mRNA cycle factors
Stress granule specific factors
125991046 (fmr1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FXMRP1_C_core
KH_9
Tudor_FRX1
FXMR_C2
Agenet
KH_1
Motif
Other DBs
NCBI-GeneID:
125991046
NCBI-ProteinID:
XP_049614506
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Position
1:complement(16408904..16424349)
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AA seq
599 aa
AA seq
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MDELLVEVRGTSGAFYKAFVKDVHEGSITVAFENNWQPERQIPFQDVRFPPPTGFCKEIN
ESDEVEVYSRANDKEPCGWWLAKVRMVKGEFYVIEYAACDATLNEIVTLERLRPINPNKP
ATKTTFLKIRLDVPDDLRQMCSKESAHKDFKKAVGAFSVTYDSEKKQLVILSVNEVTAKR
ANMMSDMHFRSLRTKLSLMLRNEEASRQLESSRQLASRFHEQFVVRDDLMGLAIGTHGAN
IQQARKVPGVTNIDLDEETCTFHIYGEDQEAVRIARSFLEFSEDIIKVPRNLVGKVIGKS
GKLIQEVVDKSGVVRVRIEPENDKKPSVASSSAAAAVSATDDGMVPFVFVGTKESISNAT
VLLDYHLNYLKEVDQLRLERLQIDEQLRQIGGGGGAGGTGPRNLKDKSYVFDNGTGLGRG
TGGGKPYGGGGRGARGRRGGGAAFASGTNSEASNASETESDHRDELSDWSLAPTEELMTG
GGTLPRRTDGRRRPGGAGLRGRGGRGRGAYKGDDVQWSDPRPRHIREPKTRAQEDTLQIR
VDGNNERSVQHGGRGGGPSSQGGHSAGGDGPLRHQQRPVRDRGMKKEKQDAPPLVNGVS
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atggatgaactactagtggaagtgaggggaacaagtggtgccttttataaggcatttgtg
aaggatgtccatgaaggctcaatcacagttgcatttgaaaacaattggcagccagagcgc
cagatcccattccaggatgtgcgatttcctcctccaacagggttctgtaaagagataaat
gagagtgatgaggttgaggtgtattccagggcgaatgacaaggagccatgtggatggtgg
ctggccaaagttcgcatggtcaaaggagagttttatgttatagagtatgctgcatgtgac
gcgacattaaacgagattgtcacgctggagcggttacgaccgatcaatcccaacaaacca
gccaccaaaactaccttcctcaagatcagactcgatgtccctgatgatctacgacagatg
tgctctaaggaatcggcgcacaaagatttcaagaaggctgtgggagcgttcagtgtcacc
tatgactctgagaagaagcagctggtcatcttgtcggtgaatgaggtcacagcgaagcgg
gccaacatgatgagtgacatgcacttcaggagcctccgcaccaaactgtctctcatgctg
agaaatgaagaggctagcagacaactggagagttcccgacaactggcatcacggttccat
gaacaatttgtagtgcgtgatgatttaatgggactcgccattgggactcatggggccaac
attcagcaagcgcgtaaagtccctggagtcactaatatagacctggatgaagagacatgc
accttccatatttatggagaggaccaggaagctgtccgtattgctcgcagtttcctggag
ttttccgaagatatcatcaaagttcctcggaacttagtaggcaaagtgattgggaagagt
ggtaaactgatccaagaagtggttgataagtctggtgtggtgcgggttcgtattgaacca
gaaaatgacaaaaagccttcggtggcatcctcatcagcggcagcggcagtctcagcaacg
gatgatggaatggtgccctttgtatttgtggggaccaaggaaagcatctcaaatgcaacg
gtattgctggactatcacctcaactaccttaaggaggtggaccaacttcgtttggagcgt
ctccagattgacgaacagctgagacagataggaggcggcggcggtgcaggaggaacaggg
ccacgaaatcttaaagacaaaagctacgtgtttgataatggcacgggccttggaagagga
acaggaggagggaaaccttatgggggaggaggaagaggtgctcgagggcgaagaggcggc
ggtgccgcttttgcctcaggtacgaactcagaggcatccaatgcttcagaaactgagtca
gaccaccgggacgagctcagcgattggtccctggctcccacagaagagctaatgacagga
ggtgggacattgccaagaaggacagatggaaggaggagaccgggtggggcaggacttcga
gggcgaggtggaagaggaagaggagcatataaaggtgacgatgtgcagtggagcgaccca
aggcctcgtcatattagagagcccaagacaagagcacaggaagacaccttacagattcgc
gtggatgggaacaacgaacgtagtgtgcagcatggagggagaggtggagggccttcatca
cagggtgggcacagtgccggcggcgacggcccactacgccaccagcagcggcccgttaga
gaccgaggaatgaagaaagagaagcaggacgctccccctctggtgaatggagtgtcgtag
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