Syngnathus scovelli (Gulf pipefish): 125991087
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Entry
125991087 CDS
T08785
Name
(RefSeq) calcium-activated potassium channel subunit alpha-1 isoform X1
KO
K04936
potassium large conductance calcium-activated channel subfamily M alpha member 1
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04270
Vascular smooth muscle contraction
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09150 Organismal Systems
09153 Circulatory system
04270 Vascular smooth muscle contraction
125991087
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
sscv04040
]
125991087
Ion channels [BR:
sscv04040
]
Voltage-gated cation channels
Potassium channel, calcium- and sodium-activated (KCa/KNa)
125991087
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Gene cluster
GFIT
Motif
Pfam:
Slo-like_RCK
Slowpoke_C
BK_channel_a
Ion_trans
Ion_trans_2
TrkA_N
Lig_chan
Motif
Other DBs
NCBI-GeneID:
125991087
NCBI-ProteinID:
XP_049614570
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Position
21:complement(3455645..3475769)
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AA seq
1245 aa
AA seq
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MRRLIERDVYAPDDARRSEARRRRLHAGSSHLLASWPPAVPSHVQPAQLLRPLGRRRIPA
ADSPRWPPSTGEPNCFERGGPEMAKSRERLSSEPSVHMAKMNVIIPFSPDVPCDSNGQRM
WWAFLASSMVTFFGGLFIILLWRTLKYLWSVCCHCRDKKELHRLTPVDGVLKRADKDEAA
VASEVGWMTSVKDWAGVMISAQTLTGRVLVVLVFALSIGALMIYFIDSSDPIESCQNFYK
DVTLQIDMAFNIFFLLYFGLRFIAASDKLWFWLEVNSVVDFFTVPPVFVSVYLNRSWLGL
RFLRALRLIQFSEILQFLNILKTSNSIKLVNLCSIFISTWLTAAGFIHLVENSGDPWENF
QNSQALSYWECVYLLMVTMSTVGYGDVYAKTTLGRLFMVFFILGGLAMFARYVPEIAALI
LNRKKYGGSYNSTRGRKHIVVCGHITLESVSNFLKDFLHKDRDDVNVEIVFLHNISPNLE
LEALFKRHFTQVEFYQGSVLNPHDLARVKIESADACLILANKYCADPDAEDASNIMRVIS
IKNYHPKIRIITQMLQYHNKAHLLNIPSWNWKEGDDAICLAELKLGFIAQSCLAQGLSTM
LANLFSMRSFIKIEEDTWQKYYLEGVANEMYTEYLSSAFVGLSFPVICELCYVKLKLLLI
AIEYKSDQRESSTLINPGNHVKMQEGTLGFFIASDAKEVKRALFYCKACHDDVTDPKRIK
KCGCKKSKNTYNGYIKSIEDDQQLSKKKQRNGGMRNSPNSSPKILRHDPLLISVNEQMES
MDENVKKYDSTGMFHWCPSKDIEKVVLVSVAQVPTLHFRTLDSEPKSFSVFILLLSPRQT
RSEAAMTVLSGHVVVCIFGDIKSAVIGLRNFVMPLRASNFHYHELKHIVFVGSLEYLKRE
WETLHNFPKVSILPGTPLSRADLRAVNINLCDMCVVLSANQNNIDDASLQDKECILASLN
IKSMIFDDSIGVLQANSQGFTPPGMERSSPENSPIHGRVRHTSVTTGANIPIITELVNDS
NVQFLDQDDDDDPDTELYLTQPFACGTAFAVSVLDSLMSATYFNDNILTLIRTLVTGGAT
PELEGLLAEENALRGGYSTPQTLANRDRCRVAQLALYDGPFADLGDGGCYGDLFCKALKT
YNMLCFGIYRLRDGHLNAQSQCTKRYVITNPPYAFELVPSDLIFCLMQFDHNAGQSRSSL
SHSSNKKSSSVHSIGTVNRANRNKSRDPRDKLKYVTTLQHLMVQQ
NT seq
3738 nt
NT seq
+upstream
nt +downstream
nt
atgcgacggctgatcgaacgagacgtttacgcaccggatgacgcacgacgaagcgaggcg
cgtcggcgtcgcctgcacgctggatcctcccatttgctagcaagttggcccccagcagta
ccgagccacgtccagccagcccaacttttgcggccgctcggcaggcgccgcatcccggcc
gccgactcgccacgatggcccccgagcaccggcgaaccaaactgttttgaaaggggcggc
cccgagatggcgaagagccgcgagcggctgagctcagagccgtcggtacacatggccaag
atgaacgtcatcatccccttctcgcccgacgtgccgtgcgacagcaacggccagcgcatg
tggtgggctttcctcgcctcgtccatggtcaccttcttcggggggctcttcatcatcctg
ctgtggcggaccctcaagtatctgtggagcgtctgctgccactgccgagacaagaaggaa
ctgcaccggctgaccccggttgacggcgtcctcaaacgcgccgacaaagatgaggcggcg
gtggccagcgaggtgggatggatgacatcagtgaaagattgggcgggagtgatgatctct
gctcagacgctgacgggacgagtcctggtggtgctggtgtttgccctcagcatcggagct
ctgatgatatacttcattgattcctcagatcccatcgagtcgtgtcagaacttctacaag
gatgtcacgctgcagatcgacatggccttcaacatcttcttccttttgtactttggcctc
cgattcatcgccgccagcgacaaattgtggttctggctggaggtcaactcggtggtggac
ttcttcacggtgccgcccgtcttcgtgtccgtctacctcaaccggagctggctcggcttg
aggttcttaagggccttgaggttgatacagttctcggaaattttacagtttttgaatata
ctcaagacaagcaactccatcaagctggtcaacttgtgttccatcttcatcagcacatgg
ctcacggcagccggattcatccatttggtggagaattccggggatccttgggagaacttt
cagaactctcaagcgctttcatactgggaatgcgtgtacctgctgatggtcaccatgtcc
acggtgggctacggcgacgtttatgccaaaaccaccctgggccgactctttatggtcttc
ttcatccttggtggtctggccatgtttgcccgctacgtgccagaaattgccgctctcatc
cttaatcggaagaaatacggagggagttataactcgaccagaggcagaaagcacatcgtg
gtgtgcggccacatcacgctggagagcgtctccaacttcctcaaagacttcctacacaag
gacagggatgatgtcaatgtagaaattgtttttctccataatatttcccctaatcttgag
ctggaagccttgttcaaacgtcacttcacccaggtggagttctaccagggctccgttctc
aaccctcacgatttggccagagtcaaaatcgaatcagctgacgcctgtttgatcttagct
aataaatactgcgccgatccagatgccgaggacgcctccaacattatgagggtcatttcc
atcaagaactaccacccaaagatccgcatcattactcagatgttgcagtatcacaacaag
gcgcatctgttgaacatccccagctggaactggaaggagggcgacgacgccatttgcctg
gccgagctcaagctgggcttcattgctcagagctgcctggctcagggcctgtccaccatg
ctggccaacctcttctccatgaggtccttcatcaagatcgaggaggacacgtggcagaag
tattacttggagggcgtcgccaacgagatgtacaccgagtacctgtcaagtgcctttgtg
ggcttgtcctttcctgttatctgcgaactgtgctacgtgaagctgaagctgctgttgata
gctatcgagtacaagtctgatcagcgggagagcagcacgctcatcaaccctggcaaccat
gtgaagatgcaggaggggacgttgggcttcttcattgccagtgacgccaaagaagtcaag
agggcgttgttctactgcaaagcgtgccatgatgacgtcacggatcccaagcgcataaag
aaatgcggatgcaaaaaatctaagaacacctacaacggatacatcaaatcaattgaagat
gaccaacaattatccaaaaaaaagcagcgtaacggaggcatgaggaattcccccaactcc
tccccaaagatcctacgacacgaccctctcctcatctccgtcaacgagcagatggaaagc
atggacgagaatgtgaagaaatacgactccacggggatgttccactggtgcccgtccaag
gacattgagaaggttgtcctggtgagcgtggcacaagtacccacactccacttcaggacc
ttggatagcgaaccaaagtcattttcagtgttcatcttgcttctttctcctcgtcagact
cgaagcgaggcggccatgactgtgctgagcggtcacgtggtggtgtgcatcttcggtgac
atcaagtctgcagtgattggcttgcgcaactttgtgatgccgctgagggccagcaacttc
cactaccacgagctcaagcacattgtctttgtgggctcgctggagtacctcaagcgcgag
tgggagacgctgcacaatttccccaaagtctccatcctgcccggcacgccgctgagtcga
gccgacctcagggccgtcaacatcaacctgtgtgacatgtgtgtcgtattgtcagccaat
cagaacaatattgatgacgcctcgctgcaggacaaagagtgcatcttggcctcgctaaac
atcaaatccatgatctttgacgacagcatcggcgtcttgcaggccaactcccaaggcttc
acgccaccgggtatggagcggtcgtctcccgagaacagcccgatccacggacgcgtccgt
cacacctcggtgacgacaggggccaacattcccatcataactgaactggttaacgattcc
aacgttcagttcctggaccaggacgacgacgacgaccccgacacggagctctacctgacc
cagccgtttgcctgcggcaccgcctttgcagtcagtgtgctggactccttaatgagcgct
acgtacttcaacgacaacatcctgacgctgatccgcacgctggtgacgggcggcgccacc
ccagagctggaaggactgctggcggaggaaaacgccctgcggggcggctacagcacgccg
cagacgctggccaacagggaccgctgtcgcgtggcccagctggccttgtacgacgggccc
ttcgccgacctcggggatggcggttgttacggcgaccttttttgcaaagccctgaaaaca
tacaacatgctctgttttggcatctatcggctacgtgacggacatcttaacgctcaaagt
cagtgcaccaagcgatacgtcattaccaatccgccctacgccttcgagctggtgccctca
gacctcatcttctgcctcatgcagttcgaccacaacgccggccagtcgcggagcagcctc
tcgcactcgtccaacaagaaaagctcctccgtacactccatcggcaccgtcaaccgagct
aaccgcaacaaaagcagggacccacgggacaagctcaaatatgtaacgacacttcagcat
ctcatggtacaacaataa
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