Syngnathus scovelli (Gulf pipefish): 125991118
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Entry
125991118 CDS
T08785
Symbol
chad
Name
(RefSeq) chondroadherin
KO
K06248
chondroadherin
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04510
Focal adhesion
sscv04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125991118 (chad)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
125991118 (chad)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
sscv00535
]
125991118 (chad)
Proteoglycans [BR:
sscv00535
]
Extracellular matrix (ECM) proteoglycans
Small leucine-rich proteoglycan (SLRP) family
class IV
125991118 (chad)
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GFIT
Motif
Pfam:
LRR_8
LRR_1
LRR_4
LRR_5
LRR_14
LRRNT
LRR_LRWD1
LRR_9
LRR_EndoS
A-2_8-polyST
LRRCT
Motif
Other DBs
NCBI-GeneID:
125991118
NCBI-ProteinID:
XP_049614665
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Position
21:3384764..3387378
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AA seq
362 aa
AA seq
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MRRVSCLLLLLLASVPTAGAAPGQCPSPCHCHGDLQHVICEGAGLKKIPRVSASTRLLNL
QRNPLGGVPAAAFADSGGLVSLHMQHCQLRQLAANAFKGLSQLVYLYLSHNQIANIQPDA
FRDLSQLTYLHLDHNRIGELAKGLFSPLVNLFVLRLDDNKLRQLRPGTFAGAKDLRWLHL
SSNQMSTLHAGSLDDVENLAALHLERNQLAVYPAAALSKLRVVEELALGGNPMRSIPERA
YSSFGRYLERLQLDGMGLEKMSEEAFAGVTALTQLDVSNNKLRWLPRTLDLSRVSNLTVA
NNPWSCTCQLAPLRRWMDANSRKAADAVCASPPAQRGKRVRDSAAFAACRLKPKRNKVAA
RH
NT seq
1089 nt
NT seq
+upstream
nt +downstream
nt
atgcggcgcgtgagctgcctgctgctgctgctgttggcgagcgtcccgacggccggggct
gcgcccggccagtgcccgagcccgtgccactgccacggcgacctgcagcacgtcatctgc
gagggcgcgggcctcaagaagatcccacgcgtgtcggcgtccacacggctgctcaacttg
cagaggaacccgctgggcggcgttccggccgccgccttcgccgacagcggcggcctggta
tcgctgcacatgcagcactgccagctgcgccagctggcggccaacgcgttcaagggcctg
agccagctggtgtacctgtacctttcacacaaccagatagccaacatccagcccgatgcc
ttccgagacctgagccagctcacctacctgcacctggaccacaaccgcatcggggagctg
gccaaaggcctcttctcgcctctcgtcaacctgtttgtgctgcgcctggacgacaacaag
ctccgccagctccgccccggcaccttcgccggcgccaaggacctgcgctggctgcacctg
agcagcaaccagatgagcacgctccatgccggatccctggatgatgtggagaacctggcc
gcgctgcacctagagcgcaaccagctggccgtctaccccgctgctgccttgagcaagctg
cgcgtggtggaggagctggccttaggcgggaaccccatgaggagcatccccgagcgcgcc
tatagctccttcggccgctacctggagaggctccagctggacggcatgggcctggagaag
atgtcggaggaggcgttcgccggcgtgacggcgctgacccagctggacgtcagcaacaac
aagctgcgctggctcccccgcacgctggacttgtctcgggtgtccaacttgaccgtggcc
aacaacccttggagctgcacctgccagctggcgccgctgcgcaggtggatggacgcaaac
agtcgcaaggcagcggacgccgtgtgcgcctcgccgccggcgcagagaggcaaacgggtg
cgagacagcgccgccttcgccgcctgccggctcaagcccaaaagaaacaaggtggccgca
cgccactga
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