Syngnathus scovelli (Gulf pipefish): 125991190
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Entry
125991190 CDS
T08785
Symbol
lrit1b
Name
(RefSeq) leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 1b
KO
K24491
leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
sscv04990
]
125991190 (lrit1b)
Domain-containing proteins not elsewhere classified [BR:
sscv04990
]
Fibronectin (FN) domain-containing proteins
Fibronectin type III domain-containing proteins
125991190 (lrit1b)
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Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
I-set
Ig_3
ig
fn3
LRR_5
Ig_2
LRR_9
LRR_EndoS
LRR_14
LRRNT
Motif
Other DBs
NCBI-GeneID:
125991190
NCBI-ProteinID:
XP_049614810
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All DBs
Position
21:complement(4059754..4062979)
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AA seq
648 aa
AA seq
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MSRHFSCAFCVALFIFPFMSTSCPAQCNCFFHKLSDGSKARSVLCNDPKITVIPPNFPMD
TSKIRIEKTAITRISSGDFRYLGSMEFLWMSFNSLSSLSMDSFQGLTNLDELRLDGNALT
SFPWESLSDMPNLKLLDLHNNKISSMPAEALAYIKNITYLDLSSNTLTTIPADVLSLWLS
VKPLQEADSSKFILGLHDNPWLCDCRLYDLVQFQKSPRSSVALIDPRLRCSDPESLSGVF
FTEAELQRCQGPRVHTAVARVRSSLGNNVLLRCGTVGVPIPELSWNRADGKKINGTIQQE
ISQEGIIWSILSVPAVSYRDSGKYVCKATNFVGTADAIISLVITDTFRAEETGGAVAKRP
RGKKPGGMGRAAYQEKLIARYVPPPTTSPGKPVVQPLDGKGVTGKYEVESYSVSSGSRGR
GRGSNPRKPEQVALGNMVANASSLQQAPEKRVVRSVKVIGDTDHTVSLNWRAPTSTNITE
FSVLYAVFGERDMRRINVGAGKNRITIDGLVPKTKYIACVCVKGLIPKKEQCVIFSTDEA
ASASGTQKLINVVVITVACVIAVPLTLIVCCGAIKKRCRKLLGQPSKEIQDSYVTFETLG
PGSKTKGTEGEYLTRLTPDESNRLLSARSSVDSEAITRTEGPPNEYFC
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgacacttttcttgtgcgttttgcgtggctttatttattttcccattcatgagc
acttcgtgtcctgcacagtgcaactgcttcttccacaaactgagcgacggttccaaagcc
agaagcgtcctttgcaatgatcccaagatcactgtcattcctccaaatttccccatggac
acctccaaaatacgcattgagaagacagccatcacgaggatttccagcggtgattttcgc
tacctcggcagcatggagtttctgtggatgtctttcaactccctgagctctctcagcatg
gacagttttcagggtctcacgaacctggacgagctgaggctggacggtaatgccctcacc
tcattcccgtgggagtctctgagcgatatgcccaatctgaagctactcgacctgcacaac
aacaagatctccagtatgcccgccgaggccctggcgtacataaagaacatcacttatctg
gatttatctagcaacactctcaccaccatccctgcagatgtcctctcgctttggttaagt
gtaaaaccacttcaggaagctgattcttccaagttcattcttggcctccatgacaacccg
tggttatgcgactgccggctttatgatctggtccagttccagaagtccccgaggtcatcg
gtcgctctaatagaccccaggctgcgatgttccgacccggagagtctgtctggggttttc
tttactgaagcggaattgcagaggtgccagggccctcgggtgcataccgctgttgcgcgt
gtccggagctcgctgggcaacaacgtcctgcttcgttgcggcactgttggcgttccaatc
cctgagctttcttggaaccgcgccgatggcaaaaaaatcaacggcaccattcagcaagag
atctcacaggagggcatcatttggtccattttgagtgtgccggcagtctcttacagggat
tcgggaaagtatgtgtgcaaagccaccaattttgtgggaaccgcagacgctatcatctcc
ttggtgatcacagacacgtttcgggctgaagagacaggcggtgcggttgccaaaagacct
agaggaaagaagcccggcggtatggggagggctgcgtatcaggaaaagcttatcgctagg
tatgtccctcccccgacgacctctcccggcaagcccgtcgtccaacccctcgacggcaaa
ggcgtcaccgggaagtacgaggtcgagagctatagcgtctcctccggctcccgaggacga
ggccgggggtcgaaccctcgaaagccagagcaggttgctttgggtaacatggtggccaac
gcctcatccttacagcaagcccccgagaaaagggtggtgcgttcggtgaaggtgattggc
gataccgaccacaccgtctcgttgaactggcgagcccccacgtccacaaatatcacagag
tttagcgtcctatacgccgtgttcggcgagcgggacatgcggcggataaacgtgggagcg
ggcaaaaaccgtatcaccatcgacggcctggtgcctaaaacaaagtacatcgcttgcgtt
tgtgtcaaaggcctgataccgaaaaaggagcagtgcgtaatcttctcgacggatgaggcg
gccagcgcaagcggcacccagaaactcatcaacgtggtggtcatcacagtagcctgcgtc
atcgcagtgcctctcactctgatcgtctgctgtggcgccattaaaaagcgttgccgcaag
ctcctcggccagccgtccaaggaaatacaggactcctatgtcacatttgagactctgggc
cccgggtccaaaactaaagggacggaaggcgagtatcttacccggttaaccccggacgag
tccaaccggctgctttccgcgaggtccagcgtcgattccgaggccataacgaggactgag
ggcccacctaatgagtacttctgctaa
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