Syngnathus scovelli (Gulf pipefish): 125991235
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Entry
125991235 CDS
T08785
Symbol
trub1
Name
(RefSeq) pseudouridylate synthase TRUB1
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sscv03016
]
125991235 (trub1)
Enzymes [BR:
sscv01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
125991235 (trub1)
Transfer RNA biogenesis [BR:
sscv03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
125991235 (trub1)
Prokaryotic type
125991235 (trub1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
GAIN_A
Motif
Other DBs
NCBI-GeneID:
125991235
NCBI-ProteinID:
XP_049614931
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All DBs
Position
21:complement(8889844..8891819)
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AA seq
276 aa
AA seq
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MAGSNAAAPLTSSLSKLQSLNGLFAIYKKQGPTSADVLNKLKETLLKEAGVQNPNPRKRK
KQSLKMGHGGTLDSSASGVLVVGVGNGTKMLSTMLAGSKKYMAVAELGKATDTLDATGSV
TEEKDFQHVTKLDVEEKLNGFVGDIMQVPPLYSALKKDGQRMSVLLKKGHKVEAKPARSV
KVYNLILQEFKLPFFTLDIECGGGFYVRSLIDDLGKALLSCAHVKELVRTKQGQFTLEQH
ALHEEHWTLEHILKSLQPCPDQEQSVDGVETPEGGT
NT seq
831 nt
NT seq
+upstream
nt +downstream
nt
atggcaggaagtaacgcagctgcacctcttactagttctctatctaaattgcaatcatta
aatggactctttgcaatttataaaaaacaaggaccgacgtctgctgatgttttgaacaaa
ctgaaagaaactttactgaaggaagccggtgtgcagaacccgaacccgaggaagaggaag
aaacagagtctcaagatgggtcacggaggaacgcttgacagttctgccagtggagtatta
gttgttggtgttggaaatggtacaaagatgctcagcacaatgttggctggttccaagaaa
tacatggctgtagcagagctgggtaaagcaacagacactctggacgctactggcagtgtt
acagaagaaaaagatttccaacatgttaccaagttggatgtggaggagaagctgaacggc
tttgttggcgatatcatgcaagtcccaccactttactcagcactgaaaaaagatggccag
cgaatgtctgttcttctgaagaaaggtcataaggtcgaggccaaacctgccagatcagtc
aaggtgtacaacttgatactgcaagagttcaaactgcccttcttcactttggatattgaa
tgtggcggcgggttttatgtgaggagcttgatagatgacctgggcaaagcacttttatcg
tgcgctcacgtcaaggaactggtccgtaccaagcagggtcagttcaccttggagcagcat
gccttacacgaggagcactggacactggaacacatcctgaaatcactgcaaccgtgccca
gatcaagaacagagtgttgatggtgtggaaacaccagaaggtggaacataa
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