Syngnathus scovelli (Gulf pipefish): 125991343
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Entry
125991343 CDS
T08785
Symbol
ercc4
Name
(RefSeq) DNA repair endonuclease XPF
KO
K10848
DNA excision repair protein ERCC-4 [EC:3.1.-.-]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03420
Nucleotide excision repair
sscv03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
125991343 (ercc4)
03460 Fanconi anemia pathway
125991343 (ercc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sscv03032
]
125991343 (ercc4)
03400 DNA repair and recombination proteins [BR:
sscv03400
]
125991343 (ercc4)
DNA replication proteins [BR:
sscv03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
125991343 (ercc4)
DNA repair and recombination proteins [BR:
sscv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
Other NER factors
125991343 (ercc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC4
HHH_5
Motif
Other DBs
NCBI-GeneID:
125991343
NCBI-ProteinID:
XP_049615139
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All DBs
Position
21:complement(4210965..4215049)
Genome browser
AA seq
903 aa
AA seq
DB search
MAGPLLEFETEMFLNLFSSDGLLVVAEGMGIDRILLQFMRVYSEQGSLVLLLNTTTPEQE
YFTEQLRVEGVTHLPRTVTSEVQGTERYNVYTEGGVLFVTSRILVVDFLTDRIPANLISG
ILVYRAHKIIESCQEAFILRLFRQKNKTGFIKAFTDKATAFSSGFCQVERVMRNLFVKKL
YLWPRFQASVNTALEKHKPDVVELHVSLTPSMRAIQSSILDIMGACLKELKRYNPTLEAE
DLSLENTLSNAFDKTIRHYLDPLWHQLGAKTKALVQDLKMLRVLLQYLTQYDCVTFLNLL
ESLRSSQKNFGSNSGWLFLDSSTSMFVNSRSRVYHIPENKKKLKVGAEAEKKQPPTVSEV
KRVLVLEQSPKWEALTEVLQEIEKENKNSQHEPGRVLICASDDRTCAQLQQYIRHGAEWL
LNRLYSRTVGKQDPSNASAFELAKCKKDKGFLKGGSKGKNGRNTRGKEQKKKPGKAKSRP
SLTLTQMIGKEQTVVETAVMGSSEDEEDFGVEDEMAEEDAPKLDLSSDAYYAVLKEPLMV
IHPLRGCTDPHSLTRVLHEVEPMFVVLYDAEVSFVRQLEIYKACRPGKPLRVYFLIYGGS
TEEQKYLTGLSKEKKAFEHLIREKATMVIPEEREGREDTNLDLARNLEPANATTNTRKAG
GQDQPKEPSRVIVDMREFRSELPSLLHRRGLDIEPVTLEVGDYILTPDICVERKSVSDLI
GSLQSGRLYTQCLSMNRYYRKPVLLIEFDPAKPFSLMARSDFRHEISSNDVSSKLTLLTL
HFPRLRILWCPSPHATGELFLELKKGRNEPDAAAAQAVTAESDAVAESTELYNAGPYDFL
LKMPGVNVKNFRALIRNADSLADLAKLSQDKLAEILENANNAKALYEFLHNVADVQTPAQ
KTK
NT seq
2712 nt
NT seq
+upstream
nt +downstream
nt
atggcaggccctttgctggagtttgagaccgaaatgtttctgaacctgttcagcagtgac
gggttgctcgtggtggctgaggggatggggatagaccgcattctgctgcagttcatgcgg
gtctactcggaacaaggcagcctggtcttactgcttaacactaccacccccgaacaggaa
tatttcacggagcagttgcgagtggagggtgtgacccacttaccgaggacggtgactagt
gaggtccaaggcaccgagcggtacaacgtgtacaccgagggaggagtcttgtttgtcact
agcaggatcctggtggtcgacttcctcaccgaccgcatacctgctaatcttatatcaggg
atcctggtgtaccgcgctcacaaaatcatcgaatcgtgtcaggaagcattcatcctgcga
ctgttccgacagaagaacaagacgggcttcatcaaagccttcactgacaaagccacagca
ttttcttcaggcttctgccaagtggagcgtgtgatgaggaacctctttgtcaagaaacta
tacctttggcccaggttccaagcgtcagtaaacacagcactagaaaaacacaaacctgat
gtggtggagctccatgtgtcactgacaccttccatgagggccatccagagctccatcctg
gacatcatgggcgcctgtctgaaggagctaaaacgttacaatcccaccttagaggcggag
gatctctccttggagaacacgcttagcaatgcctttgataagaccatccgccattacttg
gaccccttgtggcaccagctgggagctaagaccaaggcactggtccaggacctgaagatg
ctgagggttctgctgcagtacctcacccagtacgactgtgtcactttcctcaatctgctc
gagtccctccgctccagccaaaagaactttggctccaactcagggtggctcttcttggac
tccagtacatccatgtttgtaaactccaggtccagagtataccacatcccagaaaacaag
aagaaacttaaagtcggcgctgaagcggagaaaaaacagccacccactgtttcagaggtg
aagcgagtactggtgctggagcaaagcccaaagtgggaagctctgactgaggtcctgcag
gaaattgagaaagagaacaagaactcccagcatgaaccaggtcgcgttctcatctgtgcc
agcgatgacaggacttgcgctcaactgcaacagtacatcagacacggcgctgagtggctc
ctgaacagactgtacagccgcactgtcggcaaacaagacccgtcgaacgcctctgctttt
gagttggcgaaatgtaaaaaagacaagggctttctcaaaggtggctccaaaggaaaaaat
ggaagaaacaccagaggcaaagagcagaaaaagaaaccgggcaaagccaaaagcagaccc
tctctgaccttgactcagatgatcggcaaagagcagacagttgtcgaaacggcggtgatg
ggcagcagtgaggatgaggaggactttggcgtagaagatgaaatggcagaggaagacgct
ccgaagttggacttgtcatcagacgcttactacgccgttctgaaggagcctctgatggtc
attcacccgctgaggggctgcacagacccgcacagcctgacacgggtgctccatgaggtg
gagcccatgtttgtggtgctttacgacgccgaagtcagcttcgtgcgacagctggagatc
tacaaagcctgtcgacctggaaagccgctcagggtgtactttctcatctatggcggctca
acagaggaacaaaaatacctgaccgggctgtcaaaggagaagaaagcctttgaacatctc
atcagggaaaaggcaactatggtcatcccagaggagagggaaggccgagaagacaccaat
ttggacctcgctaggaatttagagcctgctaatgccaccaccaacactcgcaaagcagga
ggtcaagatcagcctaaagagccctcgcgagtcatcgtcgacatgcgcgagttccgcagt
gagcttccctccctcctccaccgccgcggactcgacatcgagcccgtcactttggaagtc
ggcgactacatcttgactccggatatctgtgtggagcgcaagagcgtcagcgatctgatc
ggctcattgcagagcggccgcctctacacccagtgcctgtccatgaaccgatattacagg
aaacccgtgttgctcattgagttcgacccggccaagcccttttctctaatggcccgctcg
gacttccgccacgagatatcgtccaatgacgtttcctcaaaactcaccttgctcacgttg
catttcccacgcctccgcattctctggtgcccctcgccgcatgccacgggcgagcttttt
ctcgagctgaaaaaaggtcgcaatgagccggacgccgccgcggctcaggcggtcacagcc
gaatcagacgccgtggccgaatcgacagagctttacaatgccgggccatacgacttcttg
ctcaagatgccaggagtcaacgtgaaaaactttcgagcgctcatcagaaatgctgacagc
ttggcagatttagccaaactgagccaggacaagctagcagaaatacttgagaatgcaaat
aacgccaaggcgctttatgagttcttgcacaatgttgcagatgttcaaactccagcacaa
aagaccaaatga
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