Syngnathus scovelli (Gulf pipefish): 125991452 Help Entry 125991452         CDS       T08785                                  Symbol col1a1b Name (RefSeq) collagen, type I, alpha 1b   KO K06236   collagen type I alpha Organism sscv  Syngnathus scovelli (Gulf pipefish) Pathway sscv04510   Focal adhesion sscv04512   ECM-receptor interaction sscv04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:sscv00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     125991452 (col1a1b)  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     125991452 (col1a1b)   09142 Cell motility    04820 Cytoskeleton in muscle cells     125991452 (col1a1b)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:sscv00536]     125991452 (col1a1b) Glycosaminoglycan binding proteins [BR:sscv00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    125991452 (col1a1b) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen COLFI VWC TILa Motif Other DBs NCBI-GeneID:  125991452 NCBI-ProteinID:  XP_049615322 LinkDB All DBs Position 21:8671471..8683398 Genome browser AA seq 1449 aa AA seqDB search MFSFVDIRLALLLSVAVLVVRGQGEDDSTFGSCTLDGQLYNDKDVWKPEPCQICVCDSGT VMCDEVICEDTTDCADPIIPEGECCPICPDGPVDPQEGIKGDVGPKGDVGPMGPPGNDGI PGQPGLPGPPGPPGPPGLGGNFSPQLSSGAGYHTKHMGGPQTPGPIGPRGPRGPAGPPGP AGPQGFTGPPGEPGEPGASGPMGARGPTGPPGKNGDNGEAGKAGRPGERGAPGLQGIRGF PGTPGLPGIKGHRGFSGLDGAKGDAGPAGPKGEAGVPGENGVPGAMGASGLPGERGRPGP AGPAGARGNDGNAGPAGPPGPTGPAGPPGFPGGAGMKGETGPQGARGAEGAQGARGEPGN PGPAGAAGAAGAPGTDGVPGAKGATGPAGIAGAPGFPGARGPAGGQGTVGAPGPKGNNGD PGVSGPKGEPGAKGETGPAGIQGPAGPAGEEGKRGARGETGAGGPRGPTGERGAPGGRGI PGADGAAGGKGAPGERGATGPPGPQGATGEAGAHGAPGAPGSKGMTGSPGSTGADGKVGP AGPAGQDGRPGPAGPTGPRGQPGIMGFPGPKGVAGENGKAGEKGPAGEMGAVGAPGKDGD AGAPGPSGPAGPAGEKGEGGPAGPSGFQGLPGPQGATGETGKPGEQGVAGEAGPSGPSGP RGDRGFPGERGAPGAGGPTGPRGSTGPAGNDGAKGETGAAGANGAVGSPGMQGMPGERGA SGLPGVKGERGEPGAKGGEGALGKDGLRGMTGPIGPPGPPGAQGEKGEPGPVGAVGPTGA RGSPGERGEAGPAGPAGFAGPPGADGQPGAKGETGATGPKGDAGAPGPGGPVGPAGPQGL AGPPGAKGARGGVGSPGATGFPGPAGRVGPAGPAGAAGPPGPGGPVGKDGQRGARGETGP AGRPGEPGAVGVVGPAGERGSPGSDGPAGAPGAPGPQGIIGKNGNMGSPGMRGASGSAGL PGPAGEPGKQGPGGPVGSRGPPGPAGPPGLSGAPGEAGREGAQGHDGAPGRDGPAGAKGD RGESGLAGPPGPPGAPGAPGVVGPSGKTGDRGEPGPAGPAGPAGPAGARGPAGPAGGKGD RGETGEPGERGHKGHRGLNGMDGIPGPAGPSGERGPAGASGPAGQRGPAGSPGAHGKDGM NGMPGPIGPPGPRGRNGEMGPHGPPGPPGPPGHPGSPGGGFDFISQPIQEKGPDPYRAGH YRADDPSVLRDRDMEVDTTLESLTKRIEKLNSPDGTQKSPARMCRDLRMSHPEWQSGTYW VDPNQGSPLDAIKVQCNMETGETCVSPSQSTVPMKNWYISRNPKDKKHVWFSESMTGGFQ FQYGTDGADAEDVSIQMTFMRLMANQASQNITYHCKNSIAYMDSASGNLKKALLLQGSND VEIRAEGNSRFTYSVSEDGCTSHTGSWGKTVIDYKTSKTSRLPIIDIAPMDVGAPDQEFG VEVGPVCFL NT seq 4350 nt NT seq  +upstreamnt  +downstreamnt atgttcagctttgtggatattcggttagcgcttttgctcagcgttgctgtgctggtggtg agaggtcaaggcgaggatgatagcacatttggcagctgcacactagacggacagttgtac aacgacaaggatgtgtggaaaccagagccgtgccagatctgtgtttgcgacagcggcaca gtgatgtgcgacgaggtcatctgcgaggatactaccgactgtgccgaccccatcatccca gagggagaatgctgccccatctgccccgacggacccgtggatccccaagagggaatcaag ggagacgttggccccaagggagatgtgggtcccatgggtcctcctggaaatgatggaatt cccggacagcctggacttcccggcccaccaggtccccctggcccccctggccttggcgga aacttctctcctcaactgagctctggcgctggctatcacaccaagcacatgggcggccca caaacgcccggccccataggtccaaggggtcctcgcggtcctgccggacctcccggacct gctggtcctcagggtttcactggtcccccaggagagcccggtgagcccggagcttctggc cccatgggtgctcgtggtcccactggcccacctggaaagaatggagacaatggtgaggct ggtaaagctggacgccctggtgagcgtggagcccctggcttgcagggtatccgtggattc cccggaacccccggacttcctggcatcaagggacacagaggtttcagcggtttggatgga gctaagggagatgccggacctgccggacctaagggagaggctggtgtccctggtgagaac ggcgtccccggagccatgggtgctagcggtctccccggtgagagaggccgtcccggacct gctggccctgctggtgctcgtggtaacgatggcaacgctggccctgctggaccccctgga cccactggacctgctggaccccctggattccctggcggcgctggtatgaagggagagact ggtccccaaggagctcgtggagctgagggagcccagggagctcgtggtgagcctggtaat ccaggacccgccggagctgctggagctgctggtgctccaggaactgatggtgttcccggt gccaagggtgccactggccccgctggtattgctggtgctcccggtttccccggtgctcgt ggtcccgctggaggtcagggtaccgttggtgctcctggtcccaagggtaacaatggcgac ccaggtgtttctggtcccaagggagagcctggtgccaagggagagactggcccagccgga attcagggacctgctggcccagctggtgaggagggcaaaagaggagctcgtggagaaact ggtgctggtggaccccgtggacctactggagagcgtggtgcccctggtggccgtggtatt cctggagctgatggagctgctggtggcaagggagcccctggtgagcgtggtgccaccggc cctcccggacctcagggagcaactggtgaggccggagctcatggcgctcctggcgcacct ggatctaagggtatgactggtagccccggaagcactggcgctgacggcaaagttggacct gctggtcccgctggacaagatggccgccccggacccgctggccccactggacccagagga cagcccggaattatgggattccccggacccaagggagttgctggtgagaacggcaaggct ggtgagaaaggacccgctggtgaaatgggcgctgtcggtgcccctggcaaagatggtgat gctggtgctcctggcccctctggccctgccggacctgctggagagaagggagagggtggt cctgctggaccttccggattccagggtcttcccggaccccaaggtgctactggtgagact ggcaagcctggtgagcagggtgttgctggtgaggctggaccttctggcccaagcggaccc agaggcgatagaggtttccctggtgagcgtggtgctcctggtgccggaggaccaactgga ccccgtggttccactggccctgctggtaacgatggagctaagggagagactggtgcagct ggtgccaacggtgccgtcggaagccccggtatgcagggaatgcctggcgagcgtggagct tctggcctgcctggagtcaagggagagagaggtgagcctggtgccaagggaggtgagggt gccctcggcaaagatggcctgcgcggtatgaccggacctatcggaccccctggacctcct ggtgctcagggtgagaagggtgagcctggcccagttggagctgttggacctaccggtgct cgtggttcccctggtgagcgtggagaggctggcccagctggacctgctggatttgccgga ccccctggtgctgacggtcaacctggtgccaagggagagactggtgctactggccccaag ggagatgctggtgctcctggtcccggtggacctgttggacccgctggaccccagggactt gctggtcctcctggtgccaagggtgctcgtggtggtgttggctctcctggtgctactggt ttccctggacccgctggcagagttggacccgctggccccgctggtgctgctggaccccct ggacctggtggccccgttggcaaagatggccaaaggggagctcgtggtgagactggtccc gccggtcgccctggtgagcctggtgctgttggtgttgttggacctgccggagagagagga tcccctggctccgatggtcccgccggtgcccccggtgcacccggaccccaaggtattatt ggaaagaatggtaatatgggtagccctggaatgcgaggtgcctctgggagcgctggtctg cccggacccgctggtgagcctggaaagcaaggacctggtggacctgttggttcccgtgga ccccctggacccgccggaccccctggactctctggtgctcccggagaggctggtcgtgag ggagctcaaggacacgatggtgcacccggtcgcgatggacctgctggcgctaagggagac cgtggcgagtctggcttggctggacccccaggacctcctggtgctcccggtgcccccgga gttgttggcccatctggcaagactggcgatcgtggagagcctggtcccgctggtcctgct ggtcctgctggccctgccggtgcccgtggtcctgctggacccgccggaggcaagggagac agaggagagactggtgagcctggagagagaggccacaaaggacacagaggactcaatggc atggatggtatacctggacctgctggtccttctggagagagaggacccgctggagcctct ggacccgctggacaaagaggacctgctggatctcccggcgcccacggtaaggatggcatg aacggtatgcccggacccatcggacctcccggacctcgtggtcgcaacggagaaatggga cctcatggtcctcctggacctcccggacctcccggacaccctggttctcccggtggcgga ttcgacttcatcagccagccaattcaggagaagggacccgatccctaccgcgctggccat taccgcgctgacgaccccagtgttctccgcgatcgtgacatggaggtcgacaccaccctg gagtctctgaccaagagaatcgagaagctgaacagccccgacggcacccagaagagcccc gcccgcatgtgccgtgacctgaggatgagccatcccgagtggcagagcggcacctactgg gtggaccccaaccagggctcccctctggacgccatcaaggttcaatgcaacatggagacc ggcgagacttgcgtctctcccagccagtccaccgtgcccatgaagaactggtacatcagc agaaaccccaaagataagaagcacgtctggttcagcgagtccatgaccggtggattccag ttccagtatggcaccgacggagctgatgccgaggatgtcagcatccagatgaccttcatg cgtctgatggccaaccaggcctctcagaacatcacataccactgcaagaacagcattgcc tacatggactcagcctccggcaacctcaagaaggctctgctgctccagggctccaacgac gtggagatcagagccgagggcaacagccgcttcacatacagcgtcagcgaggacggttgc acgtcacacactggctcatggggcaagacagtcattgactacaagacatcaaaaacatcc cgcctgccaatcattgacattgctcctatggatgttggtgcccctgatcaggaatttggc gttgaagttggcccagtttgcttcttgtaa

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