KEGG   Syngnathus scovelli (Gulf pipefish): 125991564
Entry
125991564         CDS       T08785                                 
Symbol
pms2
Name
(RefSeq) mismatch repair endonuclease PMS2 isoform X1
  KO
K10858  DNA mismatch repair protein PMS2
Organism
sscv  Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03430  Mismatch repair
sscv03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:sscv00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    125991564 (pms2)
   03460 Fanconi anemia pathway
    125991564 (pms2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sscv03400]
    125991564 (pms2)
DNA repair and recombination proteins [BR:sscv03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    MutL homologs
     125991564 (pms2)
SSDB
Motif
Pfam: MutL_C DNA_mis_repair HATPase_c_3 HATPase_c
Other DBs
NCBI-GeneID: 125991564
NCBI-ProteinID: XP_049615538
LinkDB
Position
21:5654080..5658158
AA seq 826 aa
MTDTCSLEPAGAIKAIDKNSVHQICSGQVVLTLATAVKELVENSIDAGATNIDVKLKEHG
IELVEVSDNGKGVEEANFEGLTLKHHTSKLRDFSDLLHVETFGFRGEALSSLCALSDVSV
VTCHESSTVGTKLVFDHKGHLVQRLPHPRQQGTTVTLQQLFLTLPVRHKEFRRNIKREFT
KMVHVLQSYCIISTGVRITCSNQSGQGKRNIVVNTSGSQNMRDNIGAIFGPKQLQNLLPF
QHVPLNDNVLEEYGLENAELPQKLFCITGFVSQADHGVGRSATDRQFFFINKRPCDPQKV
TKLVNEVYHMYNRHQYPFVALNIEVASECVDVNVTPDKRQILLQEEKLLLAILKSCLISM
FEAGVNKISLNNTLIPSSATASKQSEENMFESGDNTRLVTESPKSSVNLADLKAAFSNYH
NSNSGVKSNLSKAANNSPAQKNIKSFFKDTGKTSCNPGGKSPFTLKCSLKTGSSAGRSVL
DGFRYGKGRDSKDIVPSSLDIPSPDSQNCDPHSPAFDVEEPIIKKEAPTETTEVLQESYL
QIEPTAECRSLSPDLKRARKENPDCAVDAPISLQKRAVSLYFSLQDLTGKIKRLQDRKQK
EKNSEELQYRRFRAKINPGESQCAEEELKKEISKDMFKQMEIVGQFNLGFIITKLNSDIF
MIDQHATDEKYNFEMLQQHTVLQGQKLIVPQKLHLTAVNENVLMENIEIFQKNGFEFQID
EDAQVMERVKLVSLPTSKNWTFGPTDIEELIFMLSDSPGVMCRPSRVRQMFASRACRKSV
MIGTALSTSEMKKLVGHMAEIEQPWNCPHGRPTMRHLVNLDLLSQN
NT seq 2481 nt   +upstreamnt  +downstreamnt
atgactgacacttgtagcttggaacctgctggagccatcaaggccattgacaagaactca
gtgcatcaaatctgctcaggtcaggtggtgctgaccttggccactgctgttaaagaactg
gtggagaacagtattgatgctggggccaccaacattgatgtcaaactgaaggagcacgga
attgaacttgtggaagtatctgataacggaaaaggtgtcgaggaggccaactttgaagga
ttgacgttaaaacatcacacttcaaaattgagggatttttccgatctcctccatgtggag
acatttggcttcagaggtgaagccctcagttctttatgtgcactaagtgacgtaagtgtg
gtgacgtgccatgaatccagcaccgtcgggaccaagctggtttttgaccacaagggccat
ttggttcagcggctacctcatccacggcagcaaggcaccacagtcaccctgcagcagctc
ttcctaaccctacctgtcagacacaaggagttccggcgcaatattaaaagggagttcacc
aaaatggtgcatgttttgcagtcttactgcatcatctctactggcgtgcgcattacctgc
tccaaccaaagtggacagggaaagcgcaacattgttgtaaacacaagtggaagccagaat
atgagagacaacataggagctatatttggacccaaacagctacagaaccttctccccttt
cagcacgtgcctcttaatgataacgtcttggaagaatatggtcttgagaacgcggaactc
ccccaaaaattattttgcatcacaggctttgtgtcacaagcagaccacggtgtcggaaga
agtgccacagacagacaattcttttttataaacaagcgaccatgtgacccccaaaaggtg
accaaacttgtgaatgaagtttatcatatgtataacagacatcagtatccatttgttgcc
ctgaacatcgaagttgcctcagagtgtgtggatgtcaacgttaccccagacaagcggcag
attctccttcaggaggagaaactcttattggccattttaaagtcttgtctcatcagcatg
tttgaggccggggtcaataaaattagtctaaacaatactctcattcccagcagcgcgact
gcatcgaaacaatccgaagagaacatgtttgagtctggagataacacacgactcgtgact
gagagcccgaagtcatccgtgaacttggctgatctaaaagctgctttttcgaattaccac
aactccaattctggtgtcaagtccaatttgtcaaaagctgccaataattctccagcgcaa
aaaaacatcaagtctttctttaaagacactggaaaaacttcctgtaatccaggtgggaaa
tctcctttcaccctcaagtgtagtttgaagacaggttcctccgcagggaggtcagttctg
gatgggttcagatatggtaaaggtcgtgactccaaggacattgttccatccagtttggac
attccttcaccagatagtcagaattgtgacccacattcacctgcttttgatgtggaagaa
ccgatcataaaaaaagaagcaccgacagagacaaccgaagttctccaggagtcttacctg
caaatcgaaccaaccgctgagtgtcgctctttgagcccagatttgaaaagagccagaaaa
gagaatccagattgtgcggtggatgctccgatcagtttacagaagagggcagtgtcactc
tatttctcattgcaagacctgactgggaagataaaaaggttacaagaccgcaagcagaag
gaaaaaaacagtgaggagcttcagtaccgacgcttcagagccaaaattaacccgggagaa
agccaatgtgcagaggaggagctgaagaaggagatcagcaaagacatgttcaaacagatg
gaaattgtaggccagtttaatctgggctttatcatcaccaaactcaactcggacatcttc
atgatcgaccagcatgccacagatgagaaatacaactttgaaatgctgcaacaacacaca
gtgctccaaggacaaaaactcattgtccctcaaaaacttcacctcactgcagttaacgag
aacgtacttatggaaaatattgagatctttcaaaagaacggctttgaatttcagattgat
gaagatgctcaagtgatggagagggtcaagctggtatctctgcccacaagtaagaactgg
acatttggtcctaccgacattgaggagctgatcttcatgctcagtgacagcccgggggtc
atgtgtcggccatcacgcgtcaggcagatgtttgcctccagagcttgtcgaaaatctgtt
atgattggcacggcactgagtacaagcgagatgaagaaactggtgggtcacatggctgag
attgagcagccatggaactgtcctcacgggaggcccaccatgagacacctggtcaacctg
gatctactctcacaaaattga

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