Syngnathus scovelli (Gulf pipefish): 125991564
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Entry
125991564 CDS
T08785
Symbol
pms2
Name
(RefSeq) mismatch repair endonuclease PMS2 isoform X1
KO
K10858
DNA mismatch repair protein PMS2
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03430
Mismatch repair
sscv03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
125991564 (pms2)
03460 Fanconi anemia pathway
125991564 (pms2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sscv03400
]
125991564 (pms2)
DNA repair and recombination proteins [BR:
sscv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
125991564 (pms2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutL_C
DNA_mis_repair
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
125991564
NCBI-ProteinID:
XP_049615538
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Position
21:5654080..5658158
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AA seq
826 aa
AA seq
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MTDTCSLEPAGAIKAIDKNSVHQICSGQVVLTLATAVKELVENSIDAGATNIDVKLKEHG
IELVEVSDNGKGVEEANFEGLTLKHHTSKLRDFSDLLHVETFGFRGEALSSLCALSDVSV
VTCHESSTVGTKLVFDHKGHLVQRLPHPRQQGTTVTLQQLFLTLPVRHKEFRRNIKREFT
KMVHVLQSYCIISTGVRITCSNQSGQGKRNIVVNTSGSQNMRDNIGAIFGPKQLQNLLPF
QHVPLNDNVLEEYGLENAELPQKLFCITGFVSQADHGVGRSATDRQFFFINKRPCDPQKV
TKLVNEVYHMYNRHQYPFVALNIEVASECVDVNVTPDKRQILLQEEKLLLAILKSCLISM
FEAGVNKISLNNTLIPSSATASKQSEENMFESGDNTRLVTESPKSSVNLADLKAAFSNYH
NSNSGVKSNLSKAANNSPAQKNIKSFFKDTGKTSCNPGGKSPFTLKCSLKTGSSAGRSVL
DGFRYGKGRDSKDIVPSSLDIPSPDSQNCDPHSPAFDVEEPIIKKEAPTETTEVLQESYL
QIEPTAECRSLSPDLKRARKENPDCAVDAPISLQKRAVSLYFSLQDLTGKIKRLQDRKQK
EKNSEELQYRRFRAKINPGESQCAEEELKKEISKDMFKQMEIVGQFNLGFIITKLNSDIF
MIDQHATDEKYNFEMLQQHTVLQGQKLIVPQKLHLTAVNENVLMENIEIFQKNGFEFQID
EDAQVMERVKLVSLPTSKNWTFGPTDIEELIFMLSDSPGVMCRPSRVRQMFASRACRKSV
MIGTALSTSEMKKLVGHMAEIEQPWNCPHGRPTMRHLVNLDLLSQN
NT seq
2481 nt
NT seq
+upstream
nt +downstream
nt
atgactgacacttgtagcttggaacctgctggagccatcaaggccattgacaagaactca
gtgcatcaaatctgctcaggtcaggtggtgctgaccttggccactgctgttaaagaactg
gtggagaacagtattgatgctggggccaccaacattgatgtcaaactgaaggagcacgga
attgaacttgtggaagtatctgataacggaaaaggtgtcgaggaggccaactttgaagga
ttgacgttaaaacatcacacttcaaaattgagggatttttccgatctcctccatgtggag
acatttggcttcagaggtgaagccctcagttctttatgtgcactaagtgacgtaagtgtg
gtgacgtgccatgaatccagcaccgtcgggaccaagctggtttttgaccacaagggccat
ttggttcagcggctacctcatccacggcagcaaggcaccacagtcaccctgcagcagctc
ttcctaaccctacctgtcagacacaaggagttccggcgcaatattaaaagggagttcacc
aaaatggtgcatgttttgcagtcttactgcatcatctctactggcgtgcgcattacctgc
tccaaccaaagtggacagggaaagcgcaacattgttgtaaacacaagtggaagccagaat
atgagagacaacataggagctatatttggacccaaacagctacagaaccttctccccttt
cagcacgtgcctcttaatgataacgtcttggaagaatatggtcttgagaacgcggaactc
ccccaaaaattattttgcatcacaggctttgtgtcacaagcagaccacggtgtcggaaga
agtgccacagacagacaattcttttttataaacaagcgaccatgtgacccccaaaaggtg
accaaacttgtgaatgaagtttatcatatgtataacagacatcagtatccatttgttgcc
ctgaacatcgaagttgcctcagagtgtgtggatgtcaacgttaccccagacaagcggcag
attctccttcaggaggagaaactcttattggccattttaaagtcttgtctcatcagcatg
tttgaggccggggtcaataaaattagtctaaacaatactctcattcccagcagcgcgact
gcatcgaaacaatccgaagagaacatgtttgagtctggagataacacacgactcgtgact
gagagcccgaagtcatccgtgaacttggctgatctaaaagctgctttttcgaattaccac
aactccaattctggtgtcaagtccaatttgtcaaaagctgccaataattctccagcgcaa
aaaaacatcaagtctttctttaaagacactggaaaaacttcctgtaatccaggtgggaaa
tctcctttcaccctcaagtgtagtttgaagacaggttcctccgcagggaggtcagttctg
gatgggttcagatatggtaaaggtcgtgactccaaggacattgttccatccagtttggac
attccttcaccagatagtcagaattgtgacccacattcacctgcttttgatgtggaagaa
ccgatcataaaaaaagaagcaccgacagagacaaccgaagttctccaggagtcttacctg
caaatcgaaccaaccgctgagtgtcgctctttgagcccagatttgaaaagagccagaaaa
gagaatccagattgtgcggtggatgctccgatcagtttacagaagagggcagtgtcactc
tatttctcattgcaagacctgactgggaagataaaaaggttacaagaccgcaagcagaag
gaaaaaaacagtgaggagcttcagtaccgacgcttcagagccaaaattaacccgggagaa
agccaatgtgcagaggaggagctgaagaaggagatcagcaaagacatgttcaaacagatg
gaaattgtaggccagtttaatctgggctttatcatcaccaaactcaactcggacatcttc
atgatcgaccagcatgccacagatgagaaatacaactttgaaatgctgcaacaacacaca
gtgctccaaggacaaaaactcattgtccctcaaaaacttcacctcactgcagttaacgag
aacgtacttatggaaaatattgagatctttcaaaagaacggctttgaatttcagattgat
gaagatgctcaagtgatggagagggtcaagctggtatctctgcccacaagtaagaactgg
acatttggtcctaccgacattgaggagctgatcttcatgctcagtgacagcccgggggtc
atgtgtcggccatcacgcgtcaggcagatgtttgcctccagagcttgtcgaaaatctgtt
atgattggcacggcactgagtacaagcgagatgaagaaactggtgggtcacatggctgag
attgagcagccatggaactgtcctcacgggaggcccaccatgagacacctggtcaacctg
gatctactctcacaaaattga
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