Syngnathus scovelli (Gulf pipefish): 125991628
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Entry
125991628 CDS
T08785
Symbol
itgb4
Name
(RefSeq) LOW QUALITY PROTEIN: integrin beta-4
KO
K06525
integrin beta 4
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04382
Cornified envelope formation
sscv04510
Focal adhesion
sscv04512
ECM-receptor interaction
sscv04518
Integrin signaling
sscv04810
Regulation of actin cytoskeleton
sscv04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125991628 (itgb4)
04518 Integrin signaling
125991628 (itgb4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
125991628 (itgb4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
125991628 (itgb4)
04810 Regulation of actin cytoskeleton
125991628 (itgb4)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
125991628 (itgb4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sscv04147
]
125991628 (itgb4)
04515 Cell adhesion molecules [BR:
sscv04515
]
125991628 (itgb4)
04090 CD molecules [BR:
sscv04090
]
125991628 (itgb4)
Exosome [BR:
sscv04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
125991628 (itgb4)
Exosomal proteins of bladder cancer cells
125991628 (itgb4)
Cell adhesion molecules [BR:
sscv04515
]
Integrins
Integrin beta subunits
125991628 (itgb4)
CD molecules [BR:
sscv04090
]
Proteins
125991628 (itgb4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Integrin_beta
fn3
Calx-beta
Integrin_B_tail
Pur_ac_phosph_N
FN3_DSCAM-DSCAML_C
I-EGF_1
PSI_integrin
EGF_integrin
EGF_Teneurin
EGF_2
EGF_TEN
vWA_SIBA-E
SEA
Motif
Other DBs
NCBI-GeneID:
125991628
NCBI-ProteinID:
XP_068505585
LinkDB
All DBs
Position
21:9771953..9785594
Genome browser
AA seq
2005 aa
AA seq
DB search
MGRWTLHLSVGLGLLLILVSYTHAEANYCYATRSKTCSECLQAGKGCAYCPDETFNGPRC
DLYENILAHGCSAAAVITAKSRIRIEREEQINVRMAQSQVSPQQMSMSLLPGEEKMVDME
VFAPTKGPLDLYILMDFSNSMEDDLDNLKRMGQELASLVKKLSDDYTIGFGKFVDKVIEP
QTDMRPAKLAQPWPNSDPPFSFENVIKLTNDLNFFTSELQKERISGNLDAPEGGFDAILQ
AAVCTDNIGWREQSTHLLVFSTESAFHYEADGANVLSGILARNDEKCHLDGEGKYTEATK
QDYPSIPTLVRLLGKHNIIPVFAVTNHSYTYYKKLQTYFPIAEVGLLQEDSSNILQVMEM
AFESIRSKMSIRAEDRPKAFEAEFLSTSGNVAKYGDFDFRPGAIGKFKMRLKAHRTLDES
PVCKMDADEKSGLMRVKPTTFNAAMNVQATVLCPTCDCEKTAIANAPRCHGNGDLVCGKC
QCHDGWLSTFCNCSASASALDTRLCIGPGSTEPCSGRGDCRECGRCVCYNPDQFEGPYCQ
YDRTQCPRFGGFLCNDRGSCIMGRCVCSDGWEGNACECPKSNQTCLDSNGGVCNGRGKCV
CGLCECQSSGLEMTSTCEPNFQAQLGVCEATRTCAQCQAWKTGERKDKKECDKCPFRIIM
VDELKEADKVMEKCSYRDEEDDCTYHYTLENPKNPDSKDLEVQVLKKKDCPAASLLWLLP
LLLFLLLLLALLLLCCWKYCKCCKTCCQSCLALLPCCNKGRMVGFKEDEYLLRQSLLTSD
HLDTPMARTGPLKGTDVVRWKVTDNVHRSPNHPQVLVKPNPKETIQYPISLRLNRRFSEN
LSRPDSRDAEQLLKEVANNLNEVYKQIPGAQKMQKASFRTQRNAGKRQDYTIMDTILSAP
RSSYPDIVKLTERNVQSGRFSDLKVLPGYYTVATDREAAGAIEFQEGVESVDVHVPLFVK
DEDDDRKQLLVEATDVPLGIAKIGKRLVNITIIKEPASSVFSFLQPAYTYSRQDGVANIP
ISREIIEDGRTQVSYRTQDLTAKDKKDYVTVDGDLTYAPGETQKMVPVRLLELGEKDALL
DDKQVKQFVMELSNQRQGAKLGRYPRTTVTIADLPEPSVIMFKKGTQSFTTSDPNYTIPV
VRTRNQDSPATVKWRTKKGQRFDLSGLLKFNPGETEKNIVIDPRSHPAQSPPDSFQLELL
EPSSNATVGERKTTIVNVGEGVPRSPEMAQMQQKGFSGRLHAPGNPKAKATGPKSIRLNW
DPPPGNPMGYKVKYWIYGDPEKDAQVLDVKTPQAELTNLYPYCDYEMRVSAYNSFGDGTE
TDMIPCQTLEDVPGEPGRLAFNVISPTVTQISWAEPAETNGNITAYEVIYTPIDDDLKQV
GAAKKVKIDNPKKRMLLIENLVSAQTYQYKVRAKNGVGWGPYRDATINLASQPARPLSIP
IIPDVPIVDAEAGDEYDSYLMYSNEVLKSPAGSKTPSVSGDGCQYVKLVGSNLDLRKVSW
TNRVDVIANGRLSTDTEASTDAGPYSSFTQTPAPDYMMNGKWDQNFLFPGGSVTRNLSTS
STPMSTMNSHYMGGSFTTETTSNYMPGSPRRPDLMGGMHTTDVIMRKRSERGYADEHIRD
SIVMGDTSSNFPDLGVYGFSGSQNTSQNQYGYSLSQGPRARTQSSEVNEALYNLDRVLQD
ARLSPGVPDTPSRLVFSALGPTALKVSWQAPHCEKDILGYCVLYQPLNGGDMNRINVTNP
ADNSVIIQDLLPNHSYLFKVKAQSQEGWGPEREGVITIESAVDPKSPYSPMPGSPFTLST
PSAPGPLVFTALSPDSLQLSWEKPRKPNGDVLGYVVTCEQLHGGGDTRSFQVNGDSAETR
LTVPNLTENVPYKFKVQAQTTQGYGPEREGIITIESQDGGKAFSXPGIAFSKTSPHVHFL
TGALSQYNNQSMTRRDVFNMPSDMSTMSNVSRTMINDPYFSADGMMMTTQHTESSGMMTR
QITKEVVQRSVMGGTTVTKNMFYES
NT seq
6018 nt
NT seq
+upstream
nt +downstream
nt
atggggagatggacgttacatctctcggtgggccttgggcttttgctcattctcgtgagc
tacactcacgctgaagccaactattgctatgccaccaggtccaaaacctgctcggaatgt
ttgcaggcaggaaaagggtgcgcctactgtcctgatgagacctttaatggacctcgctgc
gacctgtacgaaaacattctggctcacggctgcagtgctgcggccgtgatcacggccaaa
agccgcataaggattgaaagagaagaacagatcaacgtccgaatggcccagtcgcaggtg
tccccgcagcagatgagtatgtctctgctaccaggggaagagaagatggtggacatggaa
gtctttgctccaaccaaaggccccctggatctttatattcttatggacttctccaattcc
atggaagacgatttggataacttgaagaggatgggtcaggagctggcgtcactggtgaag
aagctatcagatgactacaccatcggatttggaaagtttgtggacaaagttattgagccc
caaacggacatgagacccgctaaacttgcccaaccatggcccaacagtgaccctcccttc
tcttttgaaaacgtcatcaagctgaccaacgacttgaacttcttcaccagcgagcttcaa
aaggaaagaatctccggcaacctggacgctcctgagggaggttttgatgccatactgcaa
gctgcagtctgcacggataatatcggttggcgtgaacagagcacgcatctgttggttttc
tccaccgagtccgccttccactacgaggcggacggcgccaacgtgctgtcgggcatcctg
gcgcgcaacgacgagaaatgtcacctggacggcgaaggcaaatacacagaagctaccaag
caggattacccctccatacccacgctggtccgtctgctcggcaaacataacattattccc
gtatttgccgtcaccaaccactcctacacttactacaagaaactccaaacgtattttccc
attgctgaggtgggcctgctgcaagaggactcatccaacatcttgcaagtcatggagatg
gcttttgagagtatccgttccaagatgagcattcgtgcagaagacagacccaaagccttt
gaagctgagttcctgtccaccagtggaaatgttgccaaatacggagactttgattttagg
cctggagccattggcaaattcaagatgcgactcaaagcccatagaacgctggacgaatct
ccggtctgtaaaatggatgcggatgaaaagtcgggcctcatgagagttaaacctaccacc
tttaacgccgccatgaatgttcaagccaccgtgctctgtccaacttgtgactgtgagaag
actgccatcgccaacgcgcccagatgccatggcaacggagaccttgtgtgtgggaagtgt
caatgccacgacggctggttgagtacattctgcaactgttcagctagcgcttccgccctg
gacacccgtctgtgtatcggtccaggatcgacggaaccgtgttcgggtcgcggggactgc
cgggagtgtggaagatgtgtgtgctacaaccctgaccagtttgaaggaccttactgccag
tatgatcggacccagtgtccgcgattcggaggcttcctctgcaacgaccgtggctcctgc
attatgggccgctgcgtgtgttccgatggctgggaaggaaatgcctgcgagtgtcccaag
agcaaccagacctgtttagacagcaacgggggggtgtgcaatgggcgcggcaaatgtgtt
tgcggtctctgtgagtgtcaatcatctggtcttgaaatgacgtccacctgtgagcccaat
ttccaggctcaactcggtgtttgtgaggccacacggacttgtgctcagtgccaagcttgg
aagacgggagagaggaaggacaagaaggaatgtgacaagtgtcctttcagaatcatcatg
gtggacgaactcaaagaagcggacaaggtgatggaaaagtgcagttatcgtgacgaggag
gacgactgcacataccactacactttggaaaaccccaaaaatccagactcgaaagacttg
gaggtccaagtgctcaagaagaaagattgtccagctgccagcctcctgtggctgctccct
ctcctcttgttcctcttgttactgctggcgcttttgttgctctgctgctggaaatactgc
aaatgctgcaaaacctgctgccagagctgccttgccctgttgccttgctgtaataaaggt
cgcatggttggattcaaggaggatgagtatcttctccgccagtctctgctcacctcagac
cacctggacactccaatggcgaggacaggccctctgaaagggacagatgtcgttcgctgg
aaggttaccgataatgtgcaccggagtcccaaccacccccaggttctagtcaagcccaac
cccaaagaaacaattcagtatccaatctccctgcggcttaacaggcgcttttcggagaat
ttgtctcgtcctgattccagagatgcggagcagcttcttaaagaagttgcaaataatctt
aatgaggtctacaagcaaattcctggagcccagaaaatgcagaaggcctcatttagaaca
cagagaaatgcaggcaaaaggcaggactacaccatcatggacaccatcctgtcggcccct
cgcagcagctaccctgatattgtcaagctgaccgagagaaatgtccagtctggacgcttc
agcgacctgaaagtgttgcctggctactacacggttgcaacagatagagaggcggcaggc
gctatcgagttccaagaaggtgtggagtcggtggatgttcacgtgccactctttgtaaag
gatgaagatgatgacaggaagcagctcctggtggaggccacagatgtgccgctgggaatt
gccaaaattggaaaacgcttggtgaacatcaccatcatcaaagaacccgcttccagtgtg
ttctccttcctccagccggcctacacgtacagtcgacaggacggcgtggcaaatattcca
attagcagagagatcattgaagacggacgcacgcaagtctcgtaccgtacacaagacctc
acagccaaggataaaaaggactacgtgactgtagatggagatctcacttacgctcccggt
gagacgcaaaagatggttccggttcgtctgctggagctcggtgagaaggacgcgctcctg
gatgacaaacaggtcaaacagtttgtcatggagctgagtaaccagcgacaaggcgccaag
cttggccgctaccctcgaactacggtcacaattgccgacctacccgagcccagcgtgata
atgttcaagaagggcacccagagcttcacgacatccgacccaaattacaccatccccgtg
gtgcgcactcgcaaccaggacagccccgctacggtgaaatggcgcacaaagaagggccag
cgctttgacctctccggccttctcaagtttaaccctggagagacggagaagaatatcgtg
atcgatccaaggagccaccctgctcagagtccacctgactccttccagctggagcttttg
gaaccaagtagcaatgccacagtcggcgagaggaagaccaccattgtcaatgttggagaa
ggagttccgaggtctcctgagatggcccagatgcagcaaaaaggttttagcggtcgcctt
catgcgccaggcaacccgaaggccaaggcaactggacccaaaagcatccgcctcaactgg
gacccaccgccgggtaacccaatgggctacaaggtgaagtattggatctatggtgaccca
gagaaagatgctcaggtcttagatgtcaagacacctcaagccgagctgaccaacctgtat
ccctactgtgactatgagatgcgagtgtctgcctacaattcctttggcgatggcactgaa
acggacatgattccctgccagactttggaagatgtgcccggtgagccgggacgactcgcc
tttaatgtcataagcccgacagtcactcagatcagttgggcggagcctgccgagacgaac
ggcaacatcacagcttacgaggtcatctacacgcctatcgacgatgatctgaagcaagtc
ggtgcggctaagaaggtgaagatcgacaacccaaagaagcgaatgctattgattgagaat
ctggtgagtgcccagacctatcagtacaaggtccgtgccaagaacggcgtcggttggggc
ccctacagagacgccaccatcaacttggcatcgcaacccgccagacctctctccattccc
atcattccagatgtcccgattgtggatgccgaagcaggagacgagtatgacagttatctg
atgtacagcaacgaggtgctgaagtctcctgcgggctccaagacacccagcgtttccggt
gatggctgccaatatgtcaagttggtggggtccaacctggatctccgaaaggtgtcgtgg
acaaatcgagtggacgtcatcgccaacggtcgactcagcacagacacagaggccagcaca
gatgcgggcccatattccagcttcacacaaacacccgcgccagattacatgatgaatgga
aaatgggaccagaacttcctcttcccaggcggctccgtcacacgcaacttgtctacatcc
tctactccgatgtccacgatgaactcccactacatgggcggctccttcaccacagaaacc
acaagcaactacatgccagggagcccccgtcgacccgatctgatgggtggaatgcacaca
accgacgtcatcatgaggaaacgctcagagaggggttacgcagacgaacacatcagggac
tccatcgtcatgggagatacgtcgagcaactttccagatctaggtgtgtacggcttcagt
gggtcgcagaatacctctcagaaccaatacggctacagcctgtctcagggtcccagggcc
aggactcagtcttccgaggtcaacgaagctctgtataatttggacagggtgctccaggat
gcaagactctctccaggcgtcccagacacccccagccgactggtgttttcagctctgggt
cctacggcgctgaaagtcagctggcaggcgccccactgcgagaaggacatcctgggttac
tgcgtgctctaccagccgctcaatggaggtgatatgaaccgcatcaacgtgaccaacccg
gcggacaactctgtgattatccaggatcttctgcccaaccattcttacctgtttaaggta
aaggctcaaagccaagaaggctggggcccggaaagagaaggcgtcatcaccatcgagtcg
gccgtggaccccaaaagtccttacagtcccatgccaggctctcctttcactctgagcacc
ccgagtgctccgggtcccctcgtctttacggctctcagccccgattccttgcaactgagt
tgggagaaacccaggaagccaaacggagacgttcttggctatgtggtcacctgcgagcag
cttcacggaggaggtgacacacgttccttccaagtgaacggggacagcgcggagacccgg
ctgaccgtcccgaacctgactgagaacgtcccctacaagttcaaagttcaggctcaaacc
acacagggctacggcccggaaagggagggcatcatcaccatcgagtctcaggatggaggt
aaagctttctccnnaccaggaattgccttttccaagacatccccacatgtacatttcctc
acaggcgctttgtcgcagtacaataatcaatccatgacaaggagggacgttttcaacatg
ccaagtgacatgagcaccatgagcaacgtctctcgcaccatgatcaacgacccatacttc
tcagcagatggaatgatgatgaccacgcaacacacagaaagcagcggcatgatgacccgc
caaatcactaaggaagtggtccagaggagcgtcatgggagggaccaccgtcacaaagaat
atgttttacgagtcttaa
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