Syngnathus scovelli (Gulf pipefish): 125991798
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Entry
125991798 CDS
T08785
Symbol
lrrc4bb
Name
(RefSeq) leucine-rich repeat-containing protein 4B
KO
K16360
netrin-G3 ligand
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04514
Cell adhesion molecule (CAM) interaction
sscv04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
125991798 (lrrc4bb)
04517 IgSF CAM signaling
125991798 (lrrc4bb)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
sscv04515
]
125991798 (lrrc4bb)
Cell adhesion molecules [BR:
sscv04515
]
Immunoglobulin superfamily
NGL family
125991798 (lrrc4bb)
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Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
I-set
Ig_3
LRR_1
ig
LRR_14
LRR_9
V-set
Ig_2
LRRNT
VEGFR1-3_N_Ig-like
LRR_NXF2
DUF7617
Ig_6
Motif
Other DBs
NCBI-GeneID:
125991798
NCBI-ProteinID:
XP_049616173
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All DBs
Position
21:7626668..7634226
Genome browser
AA seq
741 aa
AA seq
DB search
MRVVMVTRPCTPSPLLWLVHLLLWFHNHGPQLTEAAPPCPVPCSCSNQASRVICTRKTLD
QVPDRISENTRYLNLQENTIQVIRSDTFKHLRHLEILQLSKNHIRQIEVGAFNGLPNLNT
LELFDNRLTVVPSQAFEYLSKLRELWLRNNPIETLAAFAFHRVPSLRRLDLGELRKLNFI
SEAAFEGLVNLRFLNLGMCGLKDIPNLTPLVRLEELELSGNQLGIVRPGSFQGLVSLRKL
WLMHSKVSVIERNTFDDLKNLEELNLSHNSLHSLPHDLFTPLHQLERVHLNHNPWSCTCE
ILWLSWWLKETVPSNTTCCARCHAPPGLKGKYIGELDQSHFICYAPVIVEPPTDLNVTEG
MAAELKCRTGTSMTSVNWLTPNGTLMTHGSYRVRISVLHDGTLNFTNVTVQDTGQYTCMV
TNSAGNTTATAVLNVSASDPSNSYSYFTTVTVETVETVGGGDDKNSARQYINETFIDFPN
PTVERGVLDGITITPSLSSLSSLSPRANRATENAVTVSIIDVTNIPGLDDVMKTTKIIIG
CFVAITFMAAVMLVVFYKLRKQHQLHKHHGPARAIEIVNVEDEIGAGAGSGISGGSTMNA
GGGEGTLRIHHPEIVNLPNIGRSDTLNHYYKTHHFNNNVMGLSIGPDGMGSGGMHKNQQG
QEIPISCTPVPISTANLLMSSGNGTNTNPSSMSPPLPMSLPMPTMGLHGSIKGFMGQNQN
PQMEPLLFKGNSKENVQETQI
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atgcgtgttgtcatggtgaccagaccctgcaccccttcccccctcctctggttggtccac
cttttgttgtggttccacaaccatggacctcagctgacagaagcggcacccccctgcccg
gtcccctgtagctgctccaatcaggccagccgcgtcatctgcaccaggaagaccctagac
caagtcccggaccgtatttccgaaaacaccagatacctcaatctccaggagaacacaatt
caggtgatcaggtctgacaccttcaaacatctgcggcatctggaaatcctccagctctcc
aagaatcacatccggcagatcgaggtgggagcgttcaatgggctgccgaacctcaacacg
ctggagctgttcgacaaccgtctcaccgtggtaccgtcgcaggcctttgagtacctcagc
aagctaagggaactatggctacggaacaaccccatcgagacgctggcggccttcgccttt
caccgcgttccctctttacgccgtctcgatctcggggaactcaggaaactgaatttcatc
tccgaggccgcctttgaaggtctggtcaacttgcgtttcttgaacctcggcatgtgcggc
ttgaaggacatccccaacctcaccccgctcgtacgactggaggagctggagttgtcgggc
aaccagttggggatcgtccggccgggatccttccagggtctggtgtctctacgaaagctg
tggctcatgcactccaaggtgtcggtgattgagcgcaacacttttgatgatctgaaaaac
ttggaggagctcaacctgtcccacaattcgcttcattcgctgcctcatgacctcttcacg
cctttgcatcagttggagagggtccacctcaatcacaacccgtggtcgtgcacctgtgag
attctgtggctcagctggtggctcaaagaaacggttcccagcaacaccacgtgttgcgcc
cgatgtcacgcaccgccgggcctgaagggcaagtacatcggcgaactggatcagagccat
ttcatctgttacgccccggtcatcgtggaaccgcccaccgacctcaacgtcaccgagggc
atggccgccgagctcaagtgccgcacgggaacctccatgacctccgtcaactggctcacg
cccaacggcaccctaatgacccacggatcgtaccgcgtcaggatctcggtgctccacgac
ggaacgctcaacttcaccaacgtgaccgtgcaggacaccgggcagtacacttgcatggtg
accaactcggcggggaacaccaccgccaccgccgtgctcaacgtctccgcgtcggatccc
agcaacagctacagctacttcaccaccgtcactgtggagacagtcgagacggtgggaggc
ggggacgataagaactcggcgaggcagtacatcaacgagaccttcatagatttccctaac
cctactgttgaacgaggggtcttagacggcatcactataaccccttctctctcttcgctt
tcctcgctgtccccgcgggcaaacagagccacggagaacgccgtgaccgtgtccataatt
gacgtaactaacattcccggcctggacgatgtcatgaaaaccaccaagattatcatcggt
tgctttgtggccattacgtttatggcggccgtcatgttggtggtcttctataagctccgc
aagcaacaccagctgcacaagcaccacggcccggccagagccatcgaaatcgtcaacgtg
gaagacgaaatcggagccggcgccggaagcggtatctcgggcgggtccaccatgaacgcc
ggcggcggagaaggaaccctgaggatacatcatcccgaaatcgtcaacctacccaacatc
ggccgttcggatacgttgaaccactactacaagacccatcatttcaacaacaacgtgatg
ggtcttagtatcgggcccgacggaatgggatcgggaggaatgcacaagaaccagcaaggc
caggaaatccccatctcctgtacgcccgtccccatctccacagccaatctgctcatgtcc
tcgggaaacggcaccaacaccaacccgagttcaatgtcgccgcctctgcccatgtctctc
cccatgcccaccatgggcctacacggatcgattaaaggtttcatgggccagaaccagaat
ccccaaatggagccgcttctcttcaaggggaactcaaaggaaaatgtccaggagactcag
atttaa
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