Syngnathus scovelli (Gulf pipefish): 125991920
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Entry
125991920 CDS
T08785
Symbol
lrp6
Name
(RefSeq) low-density lipoprotein receptor-related protein 6 isoform X1
KO
K03068
low density lipoprotein receptor-related protein 5/6
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04150
mTOR signaling pathway
sscv04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
125991920 (lrp6)
04150 mTOR signaling pathway
125991920 (lrp6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sscv04131
]
125991920 (lrp6)
Membrane trafficking [BR:
sscv04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
125991920 (lrp6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_b
FXa_inhibition
Ldl_recept_a
Vgb_lyase
SGL
DUF5050
EGF_LRP2
cEGF
Motif
Other DBs
NCBI-GeneID:
125991920
NCBI-ProteinID:
XP_049616223
LinkDB
All DBs
Position
22:complement(102153..113102)
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AA seq
1660 aa
AA seq
DB search
MAAVLRTLLFSTFCLPLRGQPLLLYANRRDLRLVDASRERANASVVVGGLEDAAAVDYVF
SQGLIYWSDVSEEAIKRTVLDRAGGGGAVHTVVPGLASPDGLACDWLAAKLYWTDSETNR
IEVSELDGSLRKVLFWQELDQPRAIALDPARGFMYWTDWGEIPKIERAGMDGTDRSVIVE
RDIYWPNGLTLDYEQRKLYWADAKHSFIHRCHLDGTNREVVVKGKLPHPFALTLFEDTLF
WTDWNTHSIHSCSKHDGGRQRVVHSDIFSPMDIHVFSAKRQSQSESKRPAARRGTAACFF
SQRSTVCGGVSASTPCSLGNGGCSHLCLLSPAEPFFRCACPTGVQLLHDNRTCRDGATRM
LLLARRTDLRRISLDTPDFTAIILQVDDIRHAIAIDYDPVDGYIYWTDDDVKAIRRSLPD
GSDAQLVVTSQVSHPDGIAVDWIARNLYWTDTGTDRIEVTRLNGTMRKILVSEDLDEPRA
IVLDPVAGYMYWTDWGQVPKIERADLDGTERLVLVNTSLGWPNGLALDYDERKIYWGDAK
TDMIEVMNMDGTSRRVLVEDRLPHIFGFTLLGDFIYWTDWQRRSIERVHKHTAEREVIIE
QLPDLMGLKAAYVRRAFGSNACAHNNGGCSHLCLFKPQGAQCGCPIGLELIADMRTCIVP
EAFLLFSRHTDIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDITRKTISRAF
MNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVAKLDGQHRQVLVWKDLDSP
RALALDPAQGYMYWTEWGGKPKIDRAAMDGSGRVTLVADVGRANGLTIDYAERRLYWTDL
DTTLIESSDMLGQDREVIADDLPHPFGLTQYQDYIYWTDWSQRSIERANKTSGQNRTVIQ
GHLDYVMDILVFHSSRQGGWNACASTNGHCSHLCLAVPVGGFVCGCPAHFSLGYDNKTCN
APTSFLLFSQKTAINRMVMDEQQSPDIILPIHNLSNVRAIDYDPLDKQLYWIDSKQNVVR
RAQEDGNQSMTVVSGLQLYDLSIDIYSRFIYWTSELSNVINVTRTDGGRVGVVLRGPHDK
PRAIVVNPERGYMYFTNLLERSPTIERAALDGTEREVLFFSGLGKPVALAVDNELAKLFW
VDSDLRRIESSDLSGANRIVIADSNILQPVGLTVFGKHLYWIDKQQQMIERIDKTTRKGR
TKIQARVAYLSDIHAVRELDMRDYGKHPCTWDNGGCSHICIVKGDGTNRCSCPVHLVLLQ
NELSCGEPPTCSPEHFSCRSGEVDCIPQAWRCDGYAECDDISDEVDCPVCSDSEFQCDSR
QCIQLSLRCNGEVNCQDRSDENNCEGETHLLPACPAISWLKSLCLSVRCPSDQFACGNGQ
CVGKHNKCDNNVDCADNSDETGCYSADEPPPPNNTVGSIVGVVMALFLVGAIYFVCQRVL
CPQMKDDSETVANDFVVHGPSSVPLGYVPHAAPLSASLPVMSGGKSAIGSLSIMGGSSGP
PYDRAHITGASSSSSSSTKGAYFPPILNPPPSPATVRSQYTLEFGYSSNSPSTHRSYSYR
PYTYRHFAPPTTPCSTDVCDSDYTPGRRAPLKSAGGRAAAKDYASDLNYDSEPFPPPPTP
RSQYLSAEENCESCPPSPYTERSYSHHLYPPPPSPCTDSS
NT seq
4983 nt
NT seq
+upstream
nt +downstream
nt
atggccgcggtgctgcggacgctcttgttttccactttttgcctcccgctgcgaggccag
ccgctgctgctgtacgccaaccgacgggacctgcggctggtggacgcgtcccgcgagcgc
gccaacgccagcgtggtggtgggcggcctggaggacgcagcggccgtggactacgtcttc
tcgcaggggctcatctactggagcgatgtgagcgaggaggccatcaagcgcactgtcttg
gaccgggcgggtggcggcggcgccgtacacacggtggtgcccggcctggcctcacccgac
ggactggcctgcgactggctggccgccaaactctactggaccgactcggagaccaatcgc
atcgaagtgtcggagctggacggaagcctgaggaaggttctcttctggcaggagctggac
cagcccagggccatcgccttggaccccgccagaggcttcatgtactggaccgactggggc
gagatccccaagatcgagcgggcgggcatggacgggaccgatcgctccgtcatcgtggag
cgcgacatctactggcccaacggactcacgctggactacgagcagcgcaagctgtactgg
gctgacgccaagcacagcttcatccaccgctgccacctggatggcaccaacagggaggtg
gtggtgaaaggcaagctgcctcacccgtttgccctcaccctatttgaggacacgcttttc
tggaccgactggaacacgcactccatccactcgtgctccaagcacgacggcggccggcag
cgcgtggtccactcggacatcttttcccccatggatatccacgtcttcagcgccaagcgg
caaagccagagtgagtccaaacggccggcggcgcggcgcggcacggctgcttgtttcttt
agccaacgttcaacggtttgtggcggcgtttcagcgagcacgccgtgctctctgggcaac
ggcggctgctctcacctgtgcctgctgtcgcccgccgagcccttcttccgctgcgcctgc
cccaccggagtgcagctgctgcacgacaacaggacctgccgagatggcgccacacgcatg
ctgctgctggctcggcggacggacctgcgccgcatctctctggacacgcccgacttcacg
gccatcatcctgcaggtggacgacatccggcacgccatcgccattgactacgacccggtg
gacggctacatctactggacggacgacgacgtgaaggccatccgccgctcgctgcccgac
ggcagcgacgcccagttggtggtcacctcgcaggtcagccacccggacggcatcgccgtg
gactggatcgcgcgcaacctctactggaccgacacgggcacggaccgtatcgaggtcacc
cgcctcaacgggaccatgcgcaagatcctggtctccgaggacctggacgagccccgggcc
atcgtgctggaccctgtggccgggtacatgtactggaccgactggggccaggtgcccaag
atcgagcgtgccgacctggacggcacggagcggctggtgctggtcaacacctcgctgggc
tggcccaacggcctggcgctggactacgacgagcgcaagatctactggggcgacgccaag
accgacatgatcgaggtgatgaacatggacgggacgtcgaggcgggtgctggtggaggac
aggcttcctcacatttttggcttcacgctgctgggcgacttcatctactggacggactgg
cagcggcgcagcatcgagcgcgtccacaagcacacggccgagcgcgaggtcatcatcgag
cagctgccggacctcatgggcctcaaggccgcctacgtccgccgggccttcggcagcaac
gcgtgcgcccacaacaacggcggctgcagccacctgtgcctgttcaagccgcagggggcg
caatgcggctgccccatcgggctggagctgatcgccgacatgcgcacgtgcatcgtgccc
gaggccttcctgctcttctcgcgccacaccgacatccgccgcatctcgctggagaccaac
aacaacaacgtggccatcccgctcaccggcgtcaaggaggcctccgccctcgactttgac
gtcaccgacaacaggatctactggaccgacatcacccgcaagaccatcagccgggccttc
atgaacggcagcgccctggagcacgtggtggagtttggtctggactacccagagggcatg
gcggtggactggctgggcaagaacctatactgggccgacacgggcaccaaccgcatcgag
gtggccaaactggacggccagcatcggcaggtcctggtctggaaggatttggacagtccc
agggcgttggcgctggacccggcccaaggttacatgtactggaccgagtggggcggcaag
cccaagatcgaccgagcggcgatggacgggagcggtcgcgtcacactggtggcggacgtg
ggccgagccaatggactcaccatcgactacgccgagcgccgcctgtactggaccgacctg
gacaccacgctcatcgagtcgtccgacatgctcggtcaggaccgcgaggtgatcgccgac
gacctccctcacccgttcggcctgactcagtaccaagactacatctactggacggactgg
agccagcgcagcatcgagcgggccaacaagaccagcgggcagaaccgcaccgtcatccag
ggccacctggactacgtcatggacatcctggtgttccactcgtcccgccagggcggctgg
aacgcctgcgcctccaccaacggccactgctcgcacctctgcctggccgtgcccgttggg
ggctttgtgtgcggctgccccgcccacttctcgctgggctacgacaacaaaacctgcaac
gcgccgacgtccttcctgctcttcagccagaagacggccatcaaccgcatggtgatggac
gagcagcagagccccgacatcatcttgcccatccacaacctgagcaacgtgcgcgccatc
gactacgacccgctggacaagcagctctactggatcgactccaagcagaacgtcgtgcgt
cgcgcccaggaggacggcaaccagagcatgacggtggtgtcgggcctgcagctgtacgac
ctgagcatcgacatctacagccgcttcatctactggaccagcgagctcagcaacgtcatc
aacgtcacgcgcaccgacggcggccgcgtgggcgtggtgctgaggggcccgcacgacaag
ccgcgcgccatcgtggtcaaccccgagcgagggtacatgtacttcaccaacctgctggag
cgctcgcccacgatcgagcgcgcggcgctggacgggacggagcgcgaggtgctcttcttc
agcgggctgggcaagcccgtggcgctggccgtggacaacgagctggccaagctcttctgg
gtggactcggacctgcggcgcatcgagagcagcgacctgtcaggcgccaatcgcatcgtc
atcgccgactccaacatcctgcagcctgtgggcctgacggtgtttggcaagcacctgtac
tggatcgacaagcagcagcagatgatcgagcgcatcgacaagaccacgcgcaagggccgc
accaagatccaggcgcgggtggcctacctcagcgacatccacgccgtgcgcgagctcgac
atgagggactacggtaaacacccgtgcacgtgggacaacggcggctgttcgcacatctgc
atcgtcaagggtgacggcaccaaccgctgttcctgtcccgtccacttggtgctgctgcag
aacgagctgtcctgcggagagccgcccacgtgttccccggagcacttctcgtgccgttcg
ggcgaggtggactgcatccctcaggcgtggcgctgcgacggctacgccgagtgcgacgac
atcagcgacgaggtggactgcccggtttgctcggacagcgagttccagtgcgacagccgc
cagtgcatccagctcagccttcgctgcaacggcgaggtcaactgccaggaccgctccgac
gagaacaattgcgaaggtgagactcacctgctgcccgcctgcccggcgatttcgtggctc
aagtcgctctgcctttcagtgcgctgcccgtcggaccagttcgcctgcggcaacggccag
tgcgtcggcaagcacaacaagtgcgacaacaacgtggactgcgccgacaactcggacgag
accggctgctactccgcggatgagccgcccccgcccaacaacacggtgggctccatcgtg
ggcgtggtgatggcgctcttcctggtgggcgccatctactttgtgtgccagcgcgtcctg
tgccctcaaatgaaagacgacagcgagacggtcgccaacgactttgtggtccacgggcct
tcctcggtgccgctgggatacgtgccgcacgccgcccccctgtccgcctcgttgccagtc
atgtccgggggcaagtcggccatcggctcgctcagcatcatgggcggcagcagcggcccg
ccgtacgaccgcgcccacatcaccggcgcctcatccagcagctcgtccagcaccaaaggc
gcctacttccctccgatcctgaacccgcctccttctcccgccaccgtccgctcgcagtat
acgctggagttcggatactcgtccaacagcccgtccacgcaccgatcctacagctaccgg
ccgtacacgtaccgccactttgcccctcccaccacgccgtgcagcaccgacgtgtgtgac
agcgactacacgccgggccgccgcgcgccgctcaagtctgcgggcggccgcgcggcggcc
aaagactacgccagcgacctcaactacgattcagagcctttcccgccgccgcccacgccc
cgcagccaatacctgtcggccgaggagaactgcgagagctgcccgccgtcgccctacacc
gagcgcagttactcgcaccacctctacccgcccccgccctcaccctgcacggactcgtcc
tga
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