Syngnathus scovelli (Gulf pipefish): 125991923
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Entry
125991923 CDS
T08785
Symbol
upf2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03013
Nucleocytoplasmic transport
sscv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
125991923 (upf2)
03015 mRNA surveillance pathway
125991923 (upf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sscv03019
]
125991923 (upf2)
Messenger RNA biogenesis [BR:
sscv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
125991923 (upf2)
mRNA cycle factors
P-body specific factors
125991923 (upf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
125991923
NCBI-ProteinID:
XP_049616245
LinkDB
All DBs
Position
22:complement(393987..403631)
Genome browser
AA seq
1323 aa
AA seq
DB search
MCKKVRERKNNFVFSQAKCLRYRGVLMSHGNQTSMTDVCFPPTNRMPAERKRSVNMDEKD
VCSTSSKDKEKDRDAERKASAATSRDKTKDEAKMSGKKDGGKDEKRKRQEEEKKKKEEKE
RKKKEEEKQKAEEEQKQKDEEAKKQQEEEEKKLQEEEAKRQREEEAAILKEQEEGQQLHQ
EAWERHHCRKELRARNQNAQESRPEEAFFSRLDSSLKKNTAFVKKLRTLTEQQRDSLSND
FASLNLSKYIGEAVGSVVEAKLKISDVGCAVHLCSLFHQRYGDFAPLLLQAWKKHFEARK
EDKAPNVSKLRTDLRFLAELTIVGFFTDKEGLSLIYEQLKNIIGADRETHTHVSVVISFC
KHCGDDIAGLLPRKVKMAADKYGLAFPPSEIISVEKQQPFQNLLREYFTSLAKHLKKDHR
ELQNIERQNRRILHSKGELSEDRHKQYEEFATSYQKLLANTQSLADLLDENMPELPQDKI
VPEEHGPGIDIFTPGKPGDYDLEGGLWEDEDARNFYENLVDLKAFVPAILFKDNDKGGGQ
SKDKDEAKDGREAKEAAVTAEELELELEALDIAEEPLEAEGADEAESDELSKKLIDEQEQ
EDEEASTGSHLKLIVDAFIQQLPNCVNRDLIDKAAMDFCMNMNTKSNRRKLVRALFTVPR
QRLDLLPFYSRLVATLHPCMSDVAEDLCSMLKGDFRFHIRKKDQINIETKNKTVRFIGEL
AKFKMFSKTDTLHCLKMLLSDFTHHHVEMACTLLETCGRFLFRSPDSHLRTSVLLEQMMR
KKQAQHLDARYVTMVENAYYYCNPPPVEKTVKKKRPPLQEYIRKLLYKDLSKVTTEKVLR
QMRKLPWQDAEVKSYLICCMVNIWNVKYNSIHCVANLLAGLVAYQEDVGIHVVDGVLEDI
RLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLFSFISFGVNQDGSPSSLDPP
EHLFRIRLVCTLLDTCGQYFDRGSSKKKLDCFLIYFQRYIWWKKSVEAWTKEHPFPIDID
YMISDTLELLRPKMRIGASLEEASRQVADLEREVLVKLGLAMEKDGRSSAMSEGPDEDED
DEDEEGGAETEEQSGNESEINEPEEDEASDNEEEEREEEEEENTDDLTDSNKENETDEEN
NEVTIRGGGLKHVACAEDEDFIQALDKMMLENLQQRSSETVKVHQLDVAIPLQLKSQLRK
GGSGQPACLAEPEADVSDTMQFVMLTRKGNKQQFKILNVPLSSHLAANHFNQQQAEQEER
MRMKKLTLDINERQEQEDYQEMLQSLAQRPAQANTNRERRPRYQHPKGAPNADLIFKTGG
RRR
NT seq
3972 nt
NT seq
+upstream
nt +downstream
nt
atgtgtaaaaaagtgagagagagaaaaaataactttgtttttagtcaggcgaaatgttta
cgctacagaggggtccttatgtcacacggaaaccaaacgtcaatgaccgatgtttgtttt
cctcccacgaacagaatgcctgctgaacgcaagcgctcagtaaacatggatgagaaagac
gtttgttccaccagcagcaaggacaaagagaaggaccgagatgcggagaggaaagcgtca
gcggccacatcgcgggacaaaaccaaagacgaggcgaagatgagcggcaaaaaggacggc
ggcaaagatgagaaaaggaagcgacaggaggaggagaagaagaagaaagaggagaaggag
cggaagaagaaagaagaggagaaacagaaggcagaggaagagcagaagcagaaggacgag
gaggcaaagaagcagcaggaggaggaggagaagaagcttcaggaggaggaggccaaaagg
caacgtgaggaggaagctgcgatcctgaaggaacaggaagaaggtcagcagctgcaccag
gaggcctgggagcgtcaccactgccggaaggagctgcgcgcccgcaaccagaatgcccag
gagagccgtccggaagaggccttcttcagccgcctggactccagcctgaagaagaacacg
gccttcgtcaagaagctgcgcacgctcaccgagcagcagcgcgattcgctctccaacgac
tttgcttcgctcaacctcagcaagtacatcggcgaggcggtgggctcggtggtggaggcc
aagctgaagatctcggacgtgggctgcgccgtgcacctgtgctcgctcttccaccagcgc
tacggcgactttgccccgctgctcctgcaggcctggaagaagcactttgaggcgcgcaag
gaggacaaggcgcccaacgtcagcaagctgcgcaccgacctgcgcttcctggccgagctc
accatcgtgggcttcttcaccgataaagagggcctgtcgctcatctacgagcagctcaag
aacatcatcggcgccgaccgcgagacgcacacgcacgtgtcggtggtgatcagcttctgc
aagcactgcggcgacgacatcgccgggctgctgccccgcaaagtcaagatggctgcagac
aagtacggcctggccttcccccccagcgagatcatcagcgtggagaagcagcagcccttc
cagaacctgctgcgcgagtacttcacctcgctcgccaagcacctcaagaaggaccacagg
gagctgcagaacatcgagaggcagaacaggcgcatcttgcattccaaaggggagctgagc
gaggaccgccacaagcagtacgaggagtttgccacgtcctaccagaagctgctggccaac
actcagtcgctggctgacctgctggacgaaaacatgccagagttgcctcaggacaagatc
gtgccggaagaacacggacccggcatcgacattttcacccccggcaagcccggagactac
gacctggaaggcggcctctgggaggacgaagacgctcgcaacttctacgagaacctggtg
gacctgaaggccttcgtccccgccatcctcttcaaggacaacgacaagggcggcggacaa
agcaaagacaaggatgaagccaaagacggccgggaggcgaaggaggccgctgtaaccgcg
gaggagctggagctagagctggaggcgctggacatcgccgaggagcctctggaagcggaa
ggagccgacgaggccgagagtgacgagctgagcaaaaagctcatcgacgagcaggagcaa
gaggacgaggaggccagcacggggtctcacctgaagctgattgtggacgctttcatccag
cagctgccaaactgcgtcaacagagacctcatagacaaggccgccatggacttctgcatg
aacatgaacaccaaatccaacaggaggaagctggtgcgcgcgctcttcaccgtgccccgg
cagcggttggatctgctgcctttttactcccgcctggtggccacgcttcatccctgcatg
tcggacgtggccgaggacctctgctccatgctgaagggagacttcaggtttcacatccgc
aagaaggaccagatcaacatcgagaccaaaaataaaacggtcaggtttatcggcgagctg
gccaagttcaagatgttctccaagacggacacgcttcattgtctcaagatgctgctgtcc
gacttcacgcatcaccacgtggagatggcctgcaccctgctggagacctgcgggcgcttc
ctcttcaggtcgcccgactctcacctgcgcacgagcgtcctgctggagcaaatgatgcgt
aaaaagcaggctcagcatctggacgcgcgctacgtgaccatggtggagaacgcctactac
tactgcaacccgccgccggtggagaagacggtgaagaaaaagcggccgccgctgcaggag
tacatccgcaagctgctctacaaagacctgtcaaaggtcaccaccgagaaggtgctcagg
cagatgcgcaagctgccttggcaggacgccgaggtgaagagctacctgatctgctgcatg
gtcaacatctggaacgtcaagtacaacagcatccactgcgtggccaacctgctggccggc
ctggtggcctaccaggaggacgtgggcatccacgtggtggacggcgtgctggaggacata
cggctgggcatggaggtgaaccagcccaagttcaaccagcggcgcatcagcagcgccaag
ttcctgggcgagctgtacaactaccgtatggtggagtcggccgtcatcttccgcacgctc
ttctccttcatttccttcggggtcaaccaggacggcagccccagctcgctggaccccccc
gagcacctcttccgcatccgcctggtgtgcacgctgctcgacacctgcggccagtacttt
gaccggggctccagcaagaagaagctggactgcttcctcatctacttccagcgctacatc
tggtggaagaagagcgtggaggcctggaccaaagagcaccccttccccatcgacatcgac
tacatgatcagcgacaccttggagctgctgcggcccaaaatgaggatcggcgcgtccttg
gaggaggccagcaggcaggtggcggacctggagagagaggtgctcgtcaaactgggctta
gccatggagaaggacggccgctccagcgccatgagcgaaggcccggacgaggacgaggac
gacgaagacgaggagggtggcgccgagacggaggagcagtcgggcaacgagagcgaaata
aacgaacccgaggaggatgaggcgtccgacaatgaagaggaagagcgggaggaagaggaa
gaggagaacaccgacgacctgaccgactccaacaaagaaaatgagacggacgaggagaac
aacgaggtgaccatccgtggcggcggactcaagcacgtggcgtgcgccgaggacgaggac
ttcatccaagccttggacaagatgatgctggagaacctgcagcagcggagcagcgagacg
gtgaaggtgcaccagctggacgtggccattccgctgcagctgaagagccagctgaggaag
ggaggctccggccagccggcgtgcctcgccgagcccgaggccgacgtctccgacaccatg
cagtttgtcatgctcacgcgcaagggcaacaagcagcagttcaaaatcctgaacgtgccg
ctgtcgtcgcacctggccgccaaccacttcaaccagcagcaggccgagcaggaggagcgc
atgcggatgaagaaactcaccctggacatcaacgagcgccaggagcaggaggactaccag
gagatgctgcagtccctggcccagcgcccggcgcaggccaacactaaccgcgagcgccgg
ccccgctaccagcaccccaaaggtgcccccaacgccgacctcatcttcaagaccggagga
aggagacgctga
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integrated database retrieval system
