Syngnathus scovelli (Gulf pipefish): 125991955
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Entry
125991955 CDS
T08785
Name
(RefSeq) CCR4-NOT transcription complex subunit 2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125991955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sscv03019
]
125991955
Messenger RNA biogenesis [BR:
sscv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125991955
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
125991955
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
125991955
NCBI-ProteinID:
XP_049616387
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All DBs
Position
22:172362..176396
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AA seq
537 aa
AA seq
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MKRPVALPARRHPPAQEGDTVAMFGANRKKFTEAGAEGEYDEPGGLYYGQPSVFPQRADK
DGSGAVDDLAGGRQRDAFVFQTTAALSSASGQLSQLGASLYGPQSALGFPARGLNSGAPP
SRSGLAQSAAAHTPPSPGRGIPPKSGRAVLNHNQQVGGERGGGGRSPGGPSPSIIGMPKQ
SRQAFTISSMSGFGVSRTPGFNVFNGTDGSENVTGLDPSDFPALADRSRRDGGANPAPLL
NPLAGRAPYVGMVTKPSGEQSQDFSIHNEDFPALPGPNYQTKEPGGGGGDDGKTVTRART
RCKAAGELLWADSRLDRSEPQLFSDNQHRKGIQVLPDGRVSNIPLGMVTDQFGMIGLLTF
IRAAETEPGTVHLALGSDLTTLGLNLNSPENLYPKFASPWASAPCRPQDIDFHVPSEYLT
NVHIRDKLAAIKLSRYGEDLLFYLYYMNGGDLLQLLAAVELFNRDWRYHKEERVWITRAP
GLEPSLKTNAYERGTYYVFDCLNWRKVAKEFHLEYDKLEERPHVPSTFNYNPAQQAF
NT seq
1614 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaggccagtggcgctaccggctcgccggcacccaccggcgcaggaaggtgacacg
gtggccatgtttggggctaaccggaagaagttcacggaggcgggagcggagggcgagtac
gacgagccgggcggcctctactacggccagccgtccgtcttcccgcagcgcgccgacaaa
gacggaagcggcgccgtggatgacctcgccggcgggcgtcagcgagatgcctttgtcttt
cagaccacggcggccctgtcctccgcctcgggacagctgtcgcagctgggagccagtctc
tacggccctcagagtgcgctcggcttccccgcgcgcggcctcaacagcggcgcgccgccg
agtcggagcggactcgctcagtcggccgccgcgcacacgcctccctcgcccggcaggggg
attccgcccaagagcggccgcgccgtcctcaaccacaaccagcaggtggggggagaacgg
gggggcggggggcggagtcccggtggcccctcacccagcatcattggaatgcccaaacag
tcgcggcaagccttcaccatcagcagcatgtcaggtttcggcgtgagcaggactcccgga
ttcaacgtcttcaacggcacagatggcagcgaaaacgtgacgggcctggacccgtccgac
ttcccggcgctggccgaccgcagtcggcgagacggcggcgccaaccccgcgccgctgctc
aacccgctggccgggcgggcgccctacgttggcatggtaactaagccgtctggcgagcag
tcgcaagacttctccatccacaacgaggatttcccagcactaccgggcccaaactaccag
accaaagagcccggcggcggcggcggcgacgacggcaaaacggtgacgcgcgcgcgcact
cgctgcaaagccgccggcgaattgctgtgggctgactctcgtctcgaccgctcagaacct
cagctcttcagcgacaaccagcacaggaaaggaatacaggtgctgcccgacggacgcgtg
agcaacatcccgctcggcatggtaacggaccaattcggcatgatcggcctgctgacgttc
atccgggcggccgagaccgagcccggcacggtgcacctggctctcggctccgacctcacc
acgctaggcctcaacctcaactcgcccgagaacctctaccccaagtttgcgtctccgtgg
gcgtcggcaccgtgccggccgcaggacatcgattttcacgtaccgtcggaatacttgacc
aacgtccacatacgggacaagctggccgccatcaagttgtcccgctacggtgaggacctc
ctcttttacctttactacatgaacggcggcgacctgctgcagctgctggccgccgtggag
ctcttcaacagggactggcgctaccacaaggaggagcgggtgtggatcacgcgggcgccc
ggcctggagccgtcgctcaagacaaacgcctacgagaggggcacgtactacgtctttgac
tgcctcaactggaggaaggttgccaaggagttccacctagaatacgacaaactggaagag
cgacctcacgttccctccaccttcaactacaaccccgcccagcaggccttctga
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