Syngnathus scovelli (Gulf pipefish): 125991962
Help
Entry
125991962 CDS
T08785
Symbol
rtcb
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sscv03016
]
125991962 (rtcb)
Enzymes [BR:
sscv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
125991962 (rtcb)
Transfer RNA biogenesis [BR:
sscv03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
125991962 (rtcb)
Prokaryotic type
tRNA splicing ligases
125991962 (rtcb)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
DUF7890
Motif
Other DBs
NCBI-GeneID:
125991962
NCBI-ProteinID:
XP_049616412
LinkDB
All DBs
Position
22:146551..149558
Genome browser
AA seq
505 aa
AA seq
DB search
MSRNYNDELQYLDKIDTNCWRIKKGFVPNMKVEGIFYVNEPLEKLMFEELRNACRGGGVG
GFLPAMKQIGNVAALPGIVNKSIGLPDVHSGYGFAIGNMAAFDMDDPDAVVSPGGVGFDI
NCGVRLLRTNLDERDVQPVKEQLAQSLFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYDD
YAAKKMGVDRKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDRIAVNDRQLACARITS
QEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFSKVFQSTPDDLDMHVIYDVSHNIAKVEE
HMVDGRQRTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTERGMT
NTFGTTCHGAGRALSRAKSRRNLDFQDVLDQLADKGIAIRVASPKLVMEEAPESYKNVTD
VVDTCHEAGISRKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtagaaattacaacgacgagttgcaatatttggacaagatcgacacaaactgctgg
agaataaaaaagggctttgttcccaacatgaaggtggaaggaatcttctacgtcaacgag
cctctagaaaaattgatgtttgaggagctgcggaatgcgtgtcgaggaggaggtgtgggt
ggattccttccagccatgaaacagatcggaaacgtggcggccctgcccgggatcgtcaac
aaatccatcggcctcccagacgtccactcgggctacggcttcgccatcgggaacatggcg
gcctttgacatggacgacccggacgcggtggtgtctccgggaggcgtgggcttcgacatc
aactgcggcgtgcgtctgctgaggaccaacctggatgagcgagatgtgcagcccgtcaag
gagcagctggcgcaatcgctctttgaccacatccccgtcggcgtcggctccaaaggcgtc
attcccatgggggccaaggacctggaggaggcgctggagatgggggtggactggtcgctg
cgcgagggctacgcttgggccgaggacaaggagcactgcgaggagtacggcaggatgctg
caggccgaccccaacaaggtctcgtccaaggccaagaagcggggcctgccccagctggga
acgctgggagcgggaaaccactacgccgagatccaggtggtggacgagatctacgacgac
tacgcggccaagaagatgggcgtggaccgcaaggggcaggtgtgcgtcatgatccacagc
ggcagcagaggcctcggtcatcaggtggccacagacgcgctggtggccatggagaaggcc
atgaagcgcgacaggatcgccgtcaacgaccggcagctggcatgcgctcgcatcacgtcg
caggaaggacaggactacctgaagggaatggccgccgccggcaattacgcctgggtcaat
cgctcgtccatgaccttcctcaccaggcaggccttctccaaagtgttccagagcacgccg
gacgacctggacatgcacgtcatctacgacgtgtcgcacaacatcgccaaggtggaggag
cacatggtggacggacgccagcgcaccctgctggtgcaccgcaagggctccacgcgcgcc
ttccccccccaccacccgctcatccccgtcgactaccagttgacgggccagccggtcctg
atcgggggaaccatgggcacgtgcagctacgtcctcaccggcaccgagcgcggcatgacc
aacaccttcggaaccacatgtcacggagcgggtcgagctctgtcccgggccaaatcccgc
cgcaatctggacttccaggacgttctggaccagctggccgacaaaggcatcgccatccgg
gtggcgtcccccaaactggtcatggaggaggctcccgagtcgtacaaaaacgtgacggat
gtggtggacacgtgtcacgaggccggcatcagcaggaaggccatcaaactgaggcccatc
gccgtcatcaaaggataa
DBGET
integrated database retrieval system
