Syngnathus scovelli (Gulf pipefish): 125992036
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Entry
125992036 CDS
T08785
Symbol
nfkb1
Name
(RefSeq) nuclear factor NF-kappa-B p105 subunit
KO
K02580
nuclear factor NF-kappa-B p105 subunit
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04010
MAPK signaling pathway
sscv04210
Apoptosis
sscv04218
Cellular senescence
sscv04620
Toll-like receptor signaling pathway
sscv04621
NOD-like receptor signaling pathway
sscv04622
RIG-I-like receptor signaling pathway
sscv04623
Cytosolic DNA-sensing pathway
sscv04625
C-type lectin receptor signaling pathway
sscv04920
Adipocytokine signaling pathway
sscv05132
Salmonella infection
sscv05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
125992036 (nfkb1)
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
125992036 (nfkb1)
04218 Cellular senescence
125992036 (nfkb1)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
125992036 (nfkb1)
04621 NOD-like receptor signaling pathway
125992036 (nfkb1)
04622 RIG-I-like receptor signaling pathway
125992036 (nfkb1)
04623 Cytosolic DNA-sensing pathway
125992036 (nfkb1)
04625 C-type lectin receptor signaling pathway
125992036 (nfkb1)
09152 Endocrine system
04920 Adipocytokine signaling pathway
125992036 (nfkb1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
125992036 (nfkb1)
09171 Infectious disease: bacterial
05132 Salmonella infection
125992036 (nfkb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sscv03000
]
125992036 (nfkb1)
Transcription factors [BR:
sscv03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
125992036 (nfkb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHD_DNA_bind
RHD_dimer
Ank_2
Ank
Ank_3
Ank_4
Ank_5
Death
Motif
Other DBs
NCBI-GeneID:
125992036
NCBI-ProteinID:
XP_049616554
LinkDB
All DBs
Position
1:complement(24438985..24449371)
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AA seq
901 aa
AA seq
DB search
MAGDEHFLPVGGQILDTLMIDPSWDVPQFPTLQSHPASSRMGDGPFLHILEEPKQRGFRF
RYGCEGPSHGGLPGASSEKNKKTYPTVKICNYQGPARVVVQLVTALTPLPRLHAHSLVGK
QCDKGICILDVPPKDDSITFPNLGIQHVTKKNVAKTLEERMCEAVRMGYNFGVSIHPEVD
TPRADIHVPRQLSEQQRGAICGASCAQAKEMDLSVVRLMFTAFLPDSDGGFTRPLHPVLS
HPIYDSKAPNASNLKIVRMDRTAGCVSGGEEVYLLCDKVQKDDIQVRFFEEDDSGVTWEA
LGDFSPTDVHRQFAIVFKTPKYHDQNLQKPTQVFVQLKRKSDSETSEPKPFTYHPQIVDK
EEVQRKRQKTLPNFQDFSGLGGGGGGGGGSLYRGGPGAGGEPGSAGGGYFHGLSTFNYGR
GAGGGAFPTGYATGLEGGGVKHENTPGYDDDTDSDSDDDSAACTVALPPQQQDVQQEDED
EDIDRQASAVFLYAATGDAAYLLAGQHPLLAAQDDEGDTGLHLAVLHGQQGALDSLTRVL
AVRPPGDRILDMRNHLYQTPLHLAVTTQQPSAAQALLAAGADPTLGDRHGDTPLHLAARQ
GGAMVRLLLGHHAVRRSVDACNAAGLCAIHLAVASNQLRSLRELLEGGADVEAQERGSGK
TALHLATEADNVSLAGCLLLEGNAKVDCCTFDGSTPLHVAAGRGSVKLTALLMAAGADPH
RENLEPLFYKDDDDDDDDDEGCVPGTSPINLAASEQVLELLSGSEYRPKCPSVVLPPQGD
LQSLDASVKTRLCNAVMSEALWEKLADALGLGILKAAFRLSSDPVKTLVDSYEVSGGTVR
DLEAALRSVGSGKALSVLEEALCYQDDKRDLTTGGDDMTCTQLENLKVDGVCDSGVELSV
A
NT seq
2706 nt
NT seq
+upstream
nt +downstream
nt
atggcaggagatgagcacttccttcctgttggcggtcagatcctggacacgctgatgatt
gacccttcgtgggacgtcccacaattccctacgctgcagtcccacccggcgtcctccagg
atgggggacggtcccttcctgcatattctggaggagcccaaacagcgaggctttcgcttt
cgttacggctgcgagggtccgtctcacggcggcctgcccggagcctccagcgagaagaac
aagaagacgtatcctactgtcaagatctgcaactaccagggtccggcccgtgtggtggtc
cagctggtgacggcgctgacgcctcttccccgattgcacgcacacagtctggtgggaaag
cagtgtgacaagggcatctgcatcctggacgtgcccccaaaagatgacagcatcaccttc
cccaatttgggaatccagcacgtgaccaagaaaaacgtggccaagacgttagaggagcgc
atgtgtgaggctgtccgcatgggctacaacttcggagtctccattcaccctgaggtcgac
accccgcgtgccgacattcacgtgccccgacagctctccgagcagcagcgcggcgccatt
tgcggcgcgtcgtgtgcgcaggccaaagagatggacctcagcgtggtgcgcctcatgttc
accgcttttctccccgacagcgatggcggcttcaccagaccgctgcaccctgtcctctca
caccccatctatgacagcaaggctccaaacgcgtccaacctcaagatcgtgcggatggac
cggacggctggctgcgtgagcggcggagaggaagtttaccttctgtgtgacaaagtccag
aaagacgacatccaggtgcgcttcttcgaggaagacgactcgggtgtcacctgggaagct
ttgggagatttttccccaacggacgtgcacagacagtttgccatcgtgtttaagacgccc
aagtaccatgaccagaacctgcagaagcccacccaggtctttgtgcagctcaagagaaag
tcggacagcgagacgagcgagcccaagcccttcacgtaccaccctcagattgtcgacaaa
gaggaagtgcagaggaagcgtcagaagacgttgcccaacttccaggacttcagcggcctc
ggcggaggaggtggcggcggcggcggcagtctgtaccgaggaggccccggagcaggcggg
gagccgggctctgcaggaggaggttacttccatggtttgtccaccttcaactatgggaga
ggagctggaggcggagcttttcccacaggatacgcgacgggtctagaaggaggtggagtc
aaacacgaaaatactcctggctatgacgacgacacagactcggattccgatgacgactca
gcagcgtgcacagtggcgcttccgccacagcaacaggatgttcagcaagaagacgaggac
gaggatatcgataggcaagcgtcagccgtcttcctgtacgccgccacgggcgatgccgcg
tacctgcttgctgggcagcatcccctgttggcggcgcaggacgacgagggggacacggga
ctccatctggccgtcctccacggccagcagggggcgttggacagtctgacgcgggtgctg
gcagtgcggccgcccggggaccgaattctcgacatgagaaaccatctctaccagactcct
ctgcacctggcggtgacaacgcagcagccatccgcagcgcaggcgctgctggcggccggg
gctgaccccacgctgggtgatcgccacggcgacacgccgctgcacctggcggcgcgacag
gggggggccatggtgcgcttgctcttaggtcatcacgctgtcagacggagcgtagatgct
tgcaacgctgccggcttgtgtgccatccacttggctgtggcctccaatcagctgcgatct
cttcgggagctcttggaggggggtgccgacgtggaggctcaggagcggggcagcgggaag
acggccctgcatctcgccaccgaagccgacaacgtgtcgctcgccggctgcctgctgctg
gagggcaacgccaaggtggactgttgcaccttcgacggttccacccccctgcacgtggcc
gccgggcggggttccgtcaaactgacggcgctactcatggcggcaggtgcggaccctcac
agggagaatctggagccacttttctacaaggatgatgacgacgacgacgacgacgacgag
ggctgtgttcccggcaccagccccattaacttggctgcctctgagcaggtgctggagctt
ctcagtggtagcgaataccgtcccaaatgtcccagtgtggttctcccgcctcagggcgac
cttcagagtttggatgcctcggtgaaaacgaggctgtgtaacgccgtgatgagcgaagcg
ctctgggagaagctggccgacgctctcgggctaggaatactcaaggccgccttcagactt
agctcggacccggtcaagacgctcgtcgactcctacgaggtgtctggcggtacagtgcgg
gacctcgaggctgctctcagatcagttggttcaggcaaagcactgagcgtcctggaggag
gcgctgtgttaccaagatgacaagcgtgacctgacaacaggtggcgatgacatgacgtgc
actcagctggagaacctcaaggtggacggcgtgtgcgatagcggggtggagctttctgtg
gcgtga
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