Syngnathus scovelli (Gulf pipefish): 125992493
Help
Entry
125992493 CDS
T08785
Symbol
sox5
Name
(RefSeq) transcription factor SOX-5 isoform X4
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sscv03000
]
125992493 (sox5)
Transcription factors [BR:
sscv03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
125992493 (sox5)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
HMG_WDHD1
DGT4
Motif
Other DBs
NCBI-GeneID:
125992493
NCBI-ProteinID:
XP_049617537
LinkDB
All DBs
Position
22:2352201..2397548
Genome browser
AA seq
791 aa
AA seq
DB search
MLLLSRETDPYSSMLTEPELPQECNRMSSKRPASPYGGTDGEVTIATSRQRVEDEESEGL
GGVIHLPLASYCSKVSPRSPPFRTLDSPPNNTDLDGSKGNSLSPYPLHNATSPGKDEGGA
GCRPCSDGGSSAGALGTPERRKGSLADVVDTLKQRKMEELIKNEPEEAPSIERLLSKDWK
DKLLAMGSGHIGEIKGTPDSLAEKERQLMGMIGQLSSLREQLLAAHEEQKKLAASQMEKQ
RQQMELAKQQQDQIARQQQQLLQQQHKINLLQQQIQQVQGQLPPLMIPVFPPDQRTLAAA
AAQQGFLMPPGFNYKPGCSDPYPLQLIPTTMAAAAAATPGLGPLQLQQLYAAQLAAMQVS
PGAKQHGLASQANLGTHSPPTNAHAQSDKSRSSPQPNKTKDSEGAQPLNLSAKPKASESK
SPNSPPTSPQVPAAAAAAAAKLGPAGSMKHSVAPSSIGGPPARVSSIADLLSSLSSGAYL
NDHEAVTKAFAEARQMKEQLKREQQVLDAKVAAVSSLGLNNGRADKDKAALESLSQQLKQ
QAEDKFSHAMLDFTMSGDSDGSPSVSDSRIFREARGRGSSEPHIKRPMNAFMVWAKDERR
KILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYKYKPRPKRT
CLVDGKKLRIGEYKAIMRSRRQEMRQYFSVGQQSQLPLSSGGVVYPGALSMAGMPSPQMP
SEHSSMSSSPEPNANHHHHHSSSHLGGLKGDEPRIKEEELRLDDSNGDVYDDFDYEDEEA
DYASDENHIAQ
NT seq
2376 nt
NT seq
+upstream
nt +downstream
nt
atgttgttgctgtcgagagagacggacccttactccagcatgctcactgagcctgagcta
cctcaggagtgtaacaggatgtcttccaagcgaccagcctctccatatggggggacagat
ggagaggtaaccatagcaaccagcagacagcgagtggaggatgaggagagcgagggactg
ggtggtgtgatccacctccctttggcctcctactgcagtaaggtgtccccgcgctcgccc
cccttccgcaccttggacagcccccccaacaacacggatctggacggctccaaggggaac
tccctaagcccttaccccctgcacaatgctacctcaccgggcaaagacgaaggcggcgcc
gggtgccggccgtgcagcgacggaggctcgagcgccggcgccctggggaccccggagaga
cgcaaagggagcctggcggacgtggtggacacactgaaacaacgcaagatggaggagctg
atcaagaatgaaccagaagaagctcccagcattgagaggctgttgtcaaaggactggaag
gacaaacttttggccatgggctcagggcacattggcgaaattaaaggtacaccggacagc
ctggcggagaaagagcgccaactcatgggcatgatcggccagctgagcagcctgagggag
cagctcctggcggcccacgaggagcagaagaagctggccgcctcgcagatggagaaacag
aggcagcagatggagctggccaagcaacagcaggaccagattgcccggcaacagcagcag
ctcctgcagcagcagcacaaaatcaacctcctgcagcaacaaatacagcaggtccagggc
caactcccgccgctgatgattcccgtctttcccccggaccagaggaccctggcggcggcg
gcggcccagcagggcttcctcatgccacccggcttcaactacaaaccgggctgcagtgac
ccgtaccctctgcagctcatccccacaacaatggcggcggcagctgccgccacaccgggc
ctgggccctcttcagcttcagcagttgtacgcggctcagctggcggccatgcaggtctcc
cccggggccaagcagcacggcctggcgtcccaagccaacctgggcacgcactccccgccc
accaacgcacacgcgcagagcgacaagagtcgtagctccccgcagccaaacaagaccaag
gacagtgagggtgcacagccactgaacctgtcggccaagcctaaggcatccgagagcaag
tcacccaactcccccccaacttccccacaggtccccgctgctgctgccgccgctgctgcc
aagctgggccccgccggctccatgaagcacagtgtcgccccctccagcatcggaggacct
ccggccagagtcagctcaatagcagacttgctgtcgtctctgtcttcgggagcctacctg
aacgaccacgaggccgtgaccaaggcgttcgctgaggcccggcaaatgaaagagcagctc
aagcgggagcagcaagtgctcgacgctaaagtggcggccgtcagcagcctcggactcaac
aacgggcgcgccgacaaggacaaagcggccttggagagtttgagtcaacaattgaagcag
caggccgaggacaagttcagccacgccatgctggacttcaccatgagcggcgactccgac
ggttccccgagcgtgtccgactctcggatattccgcgaggcccgaggtcgcggcagcagc
gagccgcatatcaaacggccgatgaacgccttcatggtgtgggccaaggatgagcgccgg
aagattctgcaggcgttccctgacatgcacaactccaacatcagcaagatcctcggctcg
cgctggaaagccatgaccaacttggagaagcagccgtactacgaggagcaggcgcgcctc
agcaagcaacatctggagaagtaccccgactacaagtacaagccgcggcccaagcgcacg
tgcctggtggacggcaagaagctacgcatcggcgagtacaaagccatcatgcgctcccgg
agacaggaaatgaggcagtacttcagcgtggggcagcagagtcagctaccgctatcgtca
gggggcgtggtctacccgggcgccctctccatggcgggcatgccgtcgccccagatgccc
tcggagcactcgagcatgtcgagtagccccgagcccaacgccaaccaccaccaccaccac
tcctcgtcccacctgggcggcctgaaaggcgacgagccccgcatcaaggaggaggagcta
cggctggacgacagtaacggcgacgtctacgacgacttcgactacgaggacgaggaagcc
gactacgccagcgacgagaatcacatcgcacaatag
DBGET
integrated database retrieval system
