Syngnathus scovelli (Gulf pipefish): 125992552
Help
Entry
125992552 CDS
T08785
Name
(RefSeq) basic helix-loop-helix ARNT-like protein 1 isoform X1
KO
K02296
aryl hydrocarbon receptor nuclear translocator-like protein 1
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sscv03000
]
125992552
Transcription factors [BR:
sscv03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
125992552
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAS_11
PAS
PAS_3
HLH
PAS_9
Per3-like_PAS-A
bHLH_NCOA
PAS_4
PAS_2
bHLH_INO2
bHLH_SAC51
bHLH_INO4
Motif
Other DBs
NCBI-GeneID:
125992552
NCBI-ProteinID:
XP_049617648
LinkDB
All DBs
Position
22:complement(3483209..3491690)
Genome browser
AA seq
612 aa
AA seq
DB search
MSDGGSGGTADRLAGRNAEEEGPSQANTLPPAGELPRKRKGDVEDTLDALVHQSLDFQMD
EDPDRSEDDQQAKMKCFSHSRQPHRQIEKRRRDKMNNLIDELAAMIPACQPMPRKLDKLT
VLRKAVQHLKALKAGSSSAFAAAARKPSIIPHDDLRHLLLWVADGFLLVVSCDRGKILFI
SESVSKILSFSRVELTGQSLFDLIHPKDISKVKEQLSSSDLNPHQRLIDAATGVPVHADA
PVPASHLSTGARRSFFCRMKHNRVEAKHKDKRILPTASIKKDSSRYCTLHCTGYMRSWPR
SDQDSEGDTEKDASGLSCLVTMCRVQAHVSRQPHKDVKVKPTEFVTRCAIDGKFTFVEQQ
ATTVIGYLPQEILGTSCYEYFHQDDLQHLAEKHRQVLRSKEKLETMCYKFKTKYGHYISL
QSQWFSFTNPWTKEVEFVVSLNRVVPRGPSHAKDDEAEGSSKAPHAEESKQLHIIPGLTS
GVGKMIYAGSIGTQIANELIDSYSFRANSSPSSGVSSPFGAAQSVSESPQASGSLSSREE
DAGSSSELKIEAVPSVSGSAGEPSQQDLDSMLVPGLSSFSNDEAAMAVIMSLLETDVNMG
QSGDFDDLHWPF
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacggaggctccggggggaccgcggaccgcttggcaggtcgcaacgcggaggag
gaagggccgagccaagccaacactttgccgcctgccggcgagttgccaaggaagcgcaag
ggtgatgtggaggacacattggacgcccttgtccaccagagtcttgacttccaaatggat
gaagaccctgacagatcagaagatgatcagcaagccaaaatgaaatgcttcagtcattct
aggcaacctcaccgtcaaattgagaagcggcggcgagacaaaatgaacaacctcatcgac
gagttagccgccatgatccccgcctgtcagcccatgccaaggaaactcgacaagctgacc
gtgttgcgcaaggccgtgcagcacttaaaagcccttaaagctgggtcgagcagcgccttc
gccgctgccgcccgcaagccttccatcatccctcatgacgacctcagacaccttttactt
tgggttgcagacggtttcctgttagttgtgagttgcgaccgagggaaaattttgtttatt
tccgaatccgtctccaagatcctcagcttcagcagggttgagctgacaggccaaagtctt
ttcgacctcatccaccccaaagacatcagcaaggtgaaggagcagctgtcttcgtccgac
ttgaaccctcaccaacgcctcatcgacgctgccaccggagtcccagtccatgcggacgcg
cccgtcccggcgtctcacttgtccaccggagccaggcgttctttcttctgccgtatgaag
cacaatcgggtggaggcaaagcacaaggacaagcgcatactgcccactgcttccattaag
aaagactcgagccgatactgtaccctccactgcacgggatacatgcgcagctggcccaga
agcgaccaggactcggaaggcgacaccgagaaggacgcctcgggcctcagctgcctggtg
accatgtgccgcgtgcaggcccacgtgtcccgccaaccccacaaagacgtcaaagtcaag
cccaccgagttcgtcactcgctgtgccatcgacgggaagttcacttttgtagagcaacaa
gcgacaactgtcattggttacctcccgcaagaaattttgggcacgtcttgttacgagtac
ttccaccaggatgacctgcagcacctggcagaaaaacacaggcaagttctccgcagcaaa
gagaagctggagacaatgtgctacaagttcaaaacaaaatatggtcactacatttcactc
caaagtcagtggttcagttttacaaacccatggaccaaagaggtcgagttcgtcgtgtcg
ttaaaccgcgttgtccccagagggcccagtcacgcaaaagatgacgaggcagaaggcagc
tccaaagctcctcacgcagaagaatcaaaacagttacacattattccaggcctcacaagt
ggtgtgggcaaaatgatctacgcgggcagtatcggtacacaaattgccaatgaactcatc
gattcctacagtttcagggccaactcatccccatcaagtggagtgtccagcccatttggt
gcagcccagagtgtatcagaatcccctcaagccagcggaagtctgtcaagccgagaggag
gatgcaggaagttcttccgagttgaagattgaggcggtccccagtgtttcgggaagtgca
ggcgagccgtcccagcaggacttggacagcatgctggtgccgggcctgagcagctttagc
aacgacgaagcggccatggcggtcatcatgagcttactggagacggacgtaaacatgggg
cagtcgggggactttgatgacttacactggcccttctga
DBGET
integrated database retrieval system
