Syngnathus scovelli (Gulf pipefish): 125993535
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Entry
125993535 CDS
T08785
Symbol
usp39
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 39
KO
K12847
U4/U6.U5 tri-snRNP-associated protein 2
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125993535 (usp39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sscv03041
]
125993535 (usp39)
Spliceosome [BR:
sscv03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP specific factors
125993535 (usp39)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
zf-UBP
UCH_1
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
125993535
NCBI-ProteinID:
XP_049618085
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All DBs
Position
3:16070313..16075192
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AA seq
503 aa
AA seq
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MITAMDTLKRERDDDLDDEDNEEVPVKKGRGRVAEDRRSRHCPYLDTINRSVLDFDFEKL
CSISLSHINVYACLICGKYFQGRGLKSHAYTHSVQFTHHVFLNLHTLKFYCLPDNYEIID
SSLEDITYVLKPTFTKQHISGLDKQGKLYRAYDGTTYLPGIVGLNNIKANDYANVVLQAF
SNVPPLRNYFLEEENYRGIRRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPHEMLQAV
VLCSKKNFQITKQGDAVDFMTWFLNALHGALGGTKKKPTILTKAFQGSMRIFSKKLPHPD
LTPEEKDALLLSDEYQEQMSESTFLFLTLDLPTAPLYKDEKEQLIIPQVPLFNILGKFNG
STEKEYKTYKENFLKRFQLTKLPPYLIFCIKRFTKNNFFVEKNPTIVNFPITNVDLREYL
TEEAQVTEKNTTYDLVANVVHDGKPTEGAYRIHVLHHGTGKWYEMQDLQVIDILPQMITL
SEAYIQIWKRQESDKDTNNHTAA
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atgataactgcaatggatactctgaagcgagaaagagatgatgatctggatgatgaagac
aacgaggaagtgccagtcaaaaaaggacgaggtcgtgttgcagaggaccgaagaagccgc
cactgtccgtatcttgacaccataaacaggagtgtgctggactttgactttgagaagctc
tgctccatctccctgtcacacatcaacgtgtacgcctgcctcatatgtggcaagtacttt
caaggtcgaggtttgaaatcccatgcgtacacccatagtgtccagttcacccaccatgtg
ttcctcaacctgcacactctcaagttttattgtctgcctgacaactatgagatcattgac
tcatcactagaagacattacgtatgttctgaaaccaacattcaccaagcagcacatctcg
ggtttggacaagcagggaaaactttacagagcctacgacggaacgacttacctgccgggc
atcgttggcctcaacaacattaaagccaatgactatgccaatgtggtcttacaggccttt
tccaatgtcccgccattgaggaactactttcttgaggaggaaaactatcgagggatccgc
agacccccgggggacatcatgttcctcctggtgcagcgttttggtgagctgatgcgcaaa
ctttggaatccgagaaacttcaaggcccatgtgtctcctcatgagatgctccaggccgtt
gtgctgtgcagtaagaagaacttccaaatcaccaagcaaggagacgctgtggacttcatg
acatggtttttgaatgcgctgcacggcgctctcggaggtacaaagaagaagccaacaatc
ctaacaaaagcgttccaaggctcaatgcggatcttctcaaagaagctaccacacccagat
ctgacaccagaggaaaaggacgcgctgctcctatccgacgagtaccaggagcagatgtcg
gagtccacattcttgttcttgacccttgacctgccaactgcccccttatacaaggatgag
aaggagcagcttatcatcccacaagtccctctcttcaacatcctgggcaagttcaatggc
agcaccgagaaggagtacaaaacatacaaggagaacttcctgaaaaggttccagttgacc
aaactgccaccgtacctcatcttttgcatcaaaaggttcacaaagaataacttctttgtg
gaaaagaaccccaccatcgtcaacttccccatcacgaatgtagatcttcgtgagtacttg
acagaagaagcccaagtcacggagaagaacacaacatatgaccttgtcgctaatgtggtg
catgatggaaaaccaactgaaggagcctacaggattcatgtcctgcatcacggaactgga
aagtggtatgagatgcaggatctgcaggtgatcgacatcttgccccagatgatcacgcta
tctgaggcctatatccagatttggaagagacaagagagtgataaggacacgaacaaccac
actgctgcgtag
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