Syngnathus scovelli (Gulf pipefish): 125993539
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Entry
125993539 CDS
T08785
Symbol
snrnp200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125993539 (snrnp200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sscv03041
]
125993539 (snrnp200)
Enzymes [BR:
sscv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125993539 (snrnp200)
Spliceosome [BR:
sscv03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
125993539 (snrnp200)
Complex C
U5 SnRNP specific factors
125993539 (snrnp200)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
WHD_SNRNP200
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
PhoH
SWI2_SNF2
Sigma54_activ_2
DUF603
Motif
Other DBs
NCBI-GeneID:
125993539
NCBI-ProteinID:
XP_049618091
LinkDB
All DBs
Position
3:15150681..15164232
Genome browser
AA seq
2136 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTKMGDKAQRTK
PQKLEERRDKRRKRDEDRHDINKMKGFTLLSEGIDEMVGIVYKPKTKETRETYEVLLSFI
HAALGDQPRDILCGAADEVLAVLKNDKMRDKERRREVEQLLGPADDTRYHVLVNLGKKIT
DYGGDKDLQNMDDNIDETYGVNVQFGSDEEEGDEDKYGEVRDEHSDEDSEGEEADVGCAL
SANLGATGDVMTVKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDR
ECENQLVLLLGFNTFDFIKILRQHRRMIQYCTMLASAQSEAEKERIIGKMESDQELSKIL
YQLQETEKEDIIREERSRRERVRKSRVDDMEAMDTGHGEAVAPRQLLDLEDLTFTQGSHF
MANKRCQLPDGSFRKQRKGYEEVHVPALKPKPFADDEVLVSIEKLPKYAQAGFEGFKTLN
RIQSKLFKTAMDTDENLLVCAPTGAGKTNVALMAMLREIGKHINMDGTINVDDFKIIYIA
PMRSLVQEMVGSFSKRLASYGITVSELTGDHQLCKEEINATQIIVCTPEKWDIITRKGGE
RTYTQLVRLIIIDEIHLLHDDRGPVLESLVARTIRNVELTQEDVRLLGLSATLPNYEDVA
TCLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVL
VFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGF
AIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWT
ELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVGKLSDMLN
AEIVLGNVQNVKDAVNWLGYTYLYVRMLRNPTLYGVSHDDRSTDPLLERRRTDLVHTAAN
VLDKNNLIKYDKRTGSFQVTDLGRIASHFYITHDSVQTYNQLLKPTLSEIELFRVFSLSS
EFKNIAVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAYISQLKLEGFALMADMV
YVTQSAGRLMRAIFEIVLSRGWAQLSDKTMNLCKMIDKRMWQSMSPLRQFKKLPEEVIKK
IEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHQFPKLDLAVHLQPITRSTLKVEL
TVTPDFQWDDKIHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLVTFFVPVFEPL
PPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNSAFEALYQ
NKFPFFNPIQTQVFNAIYNSDDNVFVGAPTGSGKTICAEFAILRMLLHNAEGRCVYITPM
EALAEQVFVDWHQKFQDFLNKKVVLLTGETSTDLKLLGKGDIIVSTPDKWDILSRRWKQR
KNVQNVSLFIVDETHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAH
WLGCSTTATFNFHPNVRPVPLELHIQGFNVSHTQTRLLSMAKPVYHAIMKHSPSKPAVVF
VPSRRQTRLTAIDILTFCAADVVPQRFLHCTEKDLVPFLDKVNDATLKETLANGVGYLHE
GLSVTERKIVEQLFNSGAVQVVVASRSLCWGVNISAHLVIVMDTQYYNGIIHAYVDYPIY
DVLQMVGKANRPILDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCLHDHFNAEIVT
KTVENKQDAVDYLTWTFLYRRMTQNPNYYNLQGMSHRHLSDHLSELVEHTLHDLEQSKCI
SIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKIRGLIEIISNAAEYKSIPIRH
HEDMLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAVRL
IQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPFFTSEHIKRCVDKGVESI
FDIMEMEDEDRSALLQLSDAQIADVARFCNRYPNIELSYEVADKDNIKSGNPVLVQVQLE
REEEVTGPVIAPMFPQNREEGWWVVIGDPKSNSLISIKRLTLQQKAKVKLDFVAPAMGVH
NYTLYFMSDAYMGCDQEYKFSTDVKEADSDADSDSD
NT seq
6411 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgtgaccgctcgtagcctgcagtatgaatataaggcgaactcgaacttggtg
ttacaagctgatcggtcactgatcgaccgcacacgaagagatgaacctacaggagaggtc
ctgtccctggtagggaagctggagggaaccaagatgggagataaagctcagaggaccaaa
cctcaaaaactggaagaaagacgagacaagaggcggaaaagagatgaggacagacatgac
atcaacaaaatgaaaggctttactcttctgtcagagggcattgatgaaatggtgggaatt
gtttataaacccaaaaccaaagaaacaagagagacttatgaagttttgctcagcttcatc
catgctgctttgggagatcagccacgtgatattttgtgtggagcagcagatgaagtcttg
gcagtactaaagaatgataaaatgagggataaggagcggcggcgtgaggttgagcagctt
cttgggcctgccgatgacacacgctaccacgtgttggtcaacctgggcaagaaaattaca
gactatgggggtgacaaggatttacagaacatggatgacaacattgatgaaacatatggt
gttaatgtccaatttggatctgatgaggaggagggcgatgaagacaagtatggagaagtg
cgcgatgagcactcagatgaagacagtgaaggagaggaagctgatgtgggctgtgctctc
tcagccaatcttggcgccacaggcgatgtgatgactgtcaagaagaaggacctccaccca
cgagacatcgatgccttttggctccaacgacagctcagtcgcttttatgatgacgctatt
gtctctcaaaagaaagctgacgaggtcttagaaatcctcaagactgccagtgatgataga
gagtgtgaaaaccagcttgtattacttctgggctttaacacatttgacttcatcaaaatc
cttcggcaacatcgtcgcatgattcagtattgcacaatgctggcgagtgctcaaagtgaa
gcagaaaaggagcggatcattggaaagatggagtctgatcaggagctgtcaaagattctg
taccagctgcaagagactgagaaggaggatataattcgggaggagcgatcccgcagagag
agggtaaggaagtcacgtgtggatgacatggaagcaatggacacaggccacggagaggca
gttgccccccgacaactgttggaccttgaagacttaaccttcacccagggaagccatttc
atggccaacaagcgttgccagcttccagatggttctttccgtaaacaaaggaaaggttat
gaagaagtacatgtgcctgcactcaaacccaagccatttgctgatgatgaggtgcttgtc
tctattgagaagctgcccaagtatgcacaggctggctttgaaggtttcaaaacccttaac
cgtatccagagcaagctgtttaaaactgccatggatactgatgagaacctgcttgtgtgt
gcaccaacgggtgctggtaaaaccaatgttgctctgatggcaatgcttagagaaattgga
aagcacataaacatggatggaaccataaatgtggatgacttcaaaataatctacattgca
cccatgcgctctctagtacaggaaatggtgggaagctttagcaagcggttggcaagctat
ggaatcacagtgtctgagctgacaggagaccaccaactgtgcaaggaggagatcaatgct
actcaaataattgtctgcacccctgaaaaatgggacatcattactcgtaaaggtggcgag
cgtacctacacccaacttgtgcgcctcattatcattgatgaaattcacttgctacatgat
gaccgtgggcctgtgttggagtctcttgtggcgaggaccatccgcaatgtggagctgact
caagaagacgtgcgtctgctgggtctcagtgccacgctccccaactacgaggatgtggca
acctgcctgcgcgttgatcctgccaagggactcttctactttgacaacagctttcgacca
gttcccctggagcagacttatgttggcatcacagagaagaaagctattaaacgtttccag
atcatgaatgaaattgtctatgagaagataatggagcatgctgggaagaaccaggtgctc
gtatttgttcactccaggaaagagactggaaaaacagccagggctattcgagacatgtgt
ttggagaaggacacgctgggtcttttccttcgagagggctcagcctccactgaagtgttg
cgcactgaagcagagcaatgcaagaaccttgagctgaaggatttgttaccttatggcttt
gcgatacatcacgctggaatgaccagagtggatcgtacgctggtggaagatctgttcgct
gatcgtcacattcaagttctggtgtccacggcaaccttggcttggggtgtcaaccttcca
gcacacactgtcatcatcaaaggtacacaggtctacagccctgagaaaggcagatggact
gagctcggtgccttggacattttgcagatgcttggtagagctggtcgtcctcagtatgac
actaagggagaaggaatcctgatcacgtcccacggagagcttcaatattacctgtccctg
ctcaaccagcagcttcctatagagagtcagatggtgggcaagctttctgacatgcttaat
gcagagattgtgctgggaaatgttcagaatgtgaaggatgcggtgaactggctgggttac
acctacctgtacgtgcgcatgcttcgcaacccaacactgtatggcgtctcccacgatgac
cgctccactgatcccctgctggagaggcgccgtactgacctggtgcatacagctgccaac
gtactagacaagaacaacctcattaaatacgacaaaaggactggtagtttccaggtgact
gatctgggccgtattgccagtcacttctacatcacacatgactcagttcaaacctataac
cagctgcttaaaccaacgctcagtgagattgagctcttccgtgtcttttcactttcttcg
gagttcaagaacatcgcagttagagaggaggagaagttggaactccagaagctgctggag
agagttcccattccagtgaaggaaagcattgaggagcccagtgccaagatcaacgtgctg
cttcaggcatacatctctcagctcaaattggaaggctttgccctgatggcagatatggtg
tatgtgacacagagtgctggaaggttgatgcgagctatttttgagattgttttgagcaga
ggctgggctcaactctcagacaaaaccatgaatctgtgcaaaatgattgacaagagaatg
tggcagtcgatgtccccactgagacagtttaagaagttaccagaagaagtgatcaagaag
attgagaagaaaaactttccctttgaacgtctctatgacctcaaccacaatgagattggt
gagctgattcgaatgcccaaaatgggcaagaccatccacaaatatgtgcaccagttccca
aaactggacctagctgtccatctgcagcccatcacccgctccaccctcaaagtggagctc
accgtcactcctgactttcagtgggatgacaagattcatggttcatcagaggctttctgg
atcctggtggaggatgttgacagtgaggtcatcctgcaccatgagtactttctgctcaaa
gccaagtacgcccaagatgagcaccttgtgaccttctttgtccccgtatttgagcctctg
cccccacagtacttcattcgtgtggtttctgaccgatggctctcttgtgagacacagctt
ccagtgtcattccgtcacctgatcctgcctgagaagtaccccccacccacagagttgctt
gacctgcagccgcttcctgtcacagctctcaggaactctgcctttgaggccctctaccag
aacaagtttcccttcttcaacccaattcaaacacaagtgttcaacgcaatatacaacagt
gatgacaatgtgttcgtgggtgcccccactgggagcggaaagacaatctgtgctgagttt
gctattctgaggatgcttcttcacaacgcagaaggtcgctgtgtctacatcacccccatg
gaagcactagcagaacaggtgtttgtcgactggcaccaaaagttccaggacttcctgaac
aagaaggtggtgttgctgacaggagaaacaagcacggatctgaaactgttgggtaaagga
gacataattgtcagcacccctgataaatgggacatcctgtctcgccgctggaaacagagg
aagaatgtccaaaatgtcagtctttttattgtggatgagacacacctcattggaggagaa
aatgggcctgtcctggaggtcatctgctctaggatgaggtacatctcctctcagattgag
cggcccatacgcatcgtggccctcagctcatctctgtccaacgccaaagacgtggctcac
tggctgggttgcagcactacagccacattcaacttccaccccaacgtcaggcctgttcct
ctggagctgcatattcagggcttcaacgtgagtcacactcagactcgcctgctctccatg
gccaaaccggtatatcacgccatcatgaagcactcgccctccaaaccagcggtggtgttt
gtgccgtcccgtaggcagactcgcctcacggccatcgacatccttactttctgtgcagct
gatgtggttcctcagaggttcctccattgcactgagaaagatcttgtgcctttcctggat
aaggtaaatgacgcaactctgaaggagactctggccaatggtgtgggctacctccatgag
ggcctgtctgtaaccgaacgaaaaatagtggagcagctcttcaactcgggggctgttcag
gtggtggtggcatctcgctccctctgctggggtgtcaacatctctgcccatcttgtgatt
gtcatggacacgcagtactacaatggtatcatacatgcctatgtggactatcccatatac
gacgtcctccagatggtcggcaaagccaacagacctattcttgacgacgagggacgctgt
gtgataatgtgtcagggctccaagaaggacttcttcaagaagttcctgtatgagcctctg
cctgtggagtcccacttggaccactgtctgcatgaccacttcaatgctgagattgtcacc
aaaacagtggagaacaagcaggacgctgtggactacctgacttggacattcctgtaccgt
cgaatgacccaaaaccccaactactacaacctgcaaggcatgtcccatcgccacctgtct
gatcacttgtcggagctggtagagcacactctccatgacctggagcagtccaagtgtatc
agcatcgaagacgagatggatgtggcaccgctcaacttgggcatgatcgccgcctactac
tacatcaactacaccactatcgagctattcagtatgtctctcaacgccaagacaaagatc
cgcggcttgatcgagatcatttccaacgctgcagagtataaaagcattcccatcaggcat
cacgaggatatgcttctccgacagctggcgcagaaggtgccccacaaactgaataacccc
aagttcaacgacccccacgtgaagaccaacctgctgctccaggcacacctctccaggatg
cagctgagtgccgagctgcagtcggacacagaagagatcctgagcaaagcggtgcgtttg
atccaggcctgcgtggatgtgctgtccagtaacggctggctgagtcctgccctggcggct
atggagttggcccagatggtcactcaggccatgtggtccaaggattcctacctcaaacag
ctgccgttcttcacctcagagcacatcaagcgctgcgtggacaagggcgtggagagcatc
ttcgacatcatggagatggaggatgaagacagaagtgctttgctgcagctctccgatgct
cagatagctgacgtggctcgcttctgtaaccgctatcctaacatcgagctgtcctacgag
gtggccgataaggacaacatcaaaagtggcaatccagttctggttcaggttcagctggag
cgagaagaggaggtcaccgggcctgtcattgcacccatgttccctcagaatcgcgaagag
ggctggtgggtcgtgattggagatcccaagtccaacagcctcatctctatcaagcgactg
actcttcaacagaaagcaaaggtcaaactggactttgttgcaccagccatgggcgttcac
aactacacgttgtacttcatgagcgacgcctacatgggttgtgaccaggagtacaagttc
agcacggatgtgaaagaggccgacagcgacgcagacagtgactcggactga
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integrated database retrieval system
